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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTGATGGACGGCCGCTTTGTGCCCAACATCACAATCGGTCCTCTTGTTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatctcggtttttgttcagacacctcaccatgaagcaagtgtcatttttgtctacagaaatctagtttacggattaaatttctaaccattaaca...

Basic information

species Physcomitrella patens
transcript PP1S39_426V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_426V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP05517 (Chlamydomonas reinhardtii), 5'ss of exon 2
CGACGTGATGGACGGCCGCTTTGTGCCCAACATCACAATCGGTCCTCTTGTTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatctcggtttttgttcagacacctcaccatgaa-gcaagtgtcatttttgtctacagaaatctagtttacggattaaatttctaaccattaaca
|||||| |||||||||||||| |||||||||||||| ||||| || || || || || ||| | || || || |||||       || ||||| |||||||| ||| |     |       || | ||  |   | ||    |  |||        |||       |||   |||  | |      |   |          
CGACGTTATGGACGGCCGCTTCGTGCCCAACATCACCATCGGCCCGCTGGTCGTCGAGGCCCTGCGCCCCGTGACTGACAAGGTCCTGGACGTGCACCTGgtaagtga----agaagcgaatcgggcatttgggcttggctaccggtgcggcccaggtcgctgactatccgttttctgcaaacgcgtcgcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380177|gb|DC927456.1|DC927456
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208354171|gb|DC957405.1|DC957405
EST:     TTGTGGATGCCATTCGTCCAGTGACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162280157|gb|FC455966.1|FC455966
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208378510|gb|DC927207.1|DC927207
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208376833|gb|DC918760.1|DC918760
EST:     AACTGATTTTACCTCTTGACGTCCACCTG                         ATGATTGNTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: AACTGA-TTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208392822|gb|DC957089.1|DC957089
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162264352|gb|FC440518.1|FC440518
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162242348|gb|FC418899.1|FC418899
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162260605|gb|FC436609.1|FC436609
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162270061|gb|FC446761.1|FC446761
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208381445|gb|DC927881.1|DC927881
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162228610|gb|FC405430.1|FC405430
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162228609|gb|FC405429.1|FC405429
EST:     TGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208368905|gb|DC947463.1|DC947463
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162224842|gb|FC401050.1|FC401050
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162250798|gb|FC426842.1|FC426842
EST:     ATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: ATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|67723693|gb|BJ973952.1|BJ973952
EST:     TGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208368955|gb|DC955040.1|DC955040
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208378784|gb|DC918932.1|DC918932
EST:     TTGTGGATGCCATTCGTCCAGTAACTGA-TTACCTCNTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208356564|gb|DC922354.1|DC922354
EST:     CGTCCAGTAACTGANTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: CGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162270060|gb|FC446760.1|FC446760
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTG-TGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162250799|gb|FC426843.1|FC426843
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208366270|gb|DC947528.1|DC947528
EST:     GGATGCCATTCGTCCAGTAACTGATTTACNTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: GGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|67695564|gb|BJ955797.1|BJ955797
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|37834722|gb|BJ592734.1|BJ592734
EST:     GTGGATGCCATTCGTCCAGTAACTGATTTACNTTCTNGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: GTGGATGCCATTCGTCCAGTAACTGATTTAC-CTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162242347|gb|FC418898.1|FC418898
EST:     GGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: GGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208374001|gb|DC944734.1|DC944734
EST:     TGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162280156|gb|FC455965.1|FC455965
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208396581|gb|DC915893.1|DC915893
EST:     NTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162230707|gb|FC406130.1|FC406130
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|162253040|gb|FC429101.1|FC429101
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
EST: gi|208347457|gb|DC925369.1|DC925369
EST:     TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTG                         ATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT
genomic: TTGTGGATGCCATTCGTCCAGTAACTGATTTACCTCTTGACGTCCACCTGgttagtaatc ... ttttttttagATGATTGTTGAACCAGAACAGCGTGTCCCAGACTTCATCAAGGCTGGTGCT