Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGATGGAGGGATGGTACCACTGGTCAGCATGTAGAATATGATCAAAGGCCTGATGTATTCCGgtgaggctctctctccccccttcccccaccttgtcgtgatctgtagttgccattcatgttttggtggttgggagcgactgttttacttttgagctatattttgattctgtgaaatttttgtacatgtag

Basic information

species Physcomitrella patens
transcript PP1S39_28V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_28V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 9
CTACTCGATGGAGGGATGGTACCACTGGTCAGCATGTAGAATATGATCAAAGGCCTGATGTATTCCGgtgaggctctctctccccccttcccccaccttgtcgtgatctgtagttgccattcatgttttggtggttgggagcgactgttttacttttgagctatattttgattctgtgaaatttttgtacatgtag
|  |  ||||||  |||     | |||| |||||||| ||||||||||||||||| ||||||||  |||       | |         |     | ||| || |   || | ||||  ||  || ||||| |         |  || | ||||  || |  |  |                               
CATCAAGATGGAAAGATTCACACTCTGGCCAGCATGTTGAATATGATCAAAGGCCAGATGTATTTAGgta------ttttgattggtgtatgttatctt-tccta--ctattgttggtatatatattttgctca-------catctttgttacgcttcatatgcag------------------------------