1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaaatcccttctcttgctcgccttgtcgtaagcgtgactgggctaattcaactatcaacttgctagatttgctctaaaatagtcactaatatt...
species | Physcomitrella patens |
transcript | PP1S392_16V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|208361429|gb|DC935116.1|DC935116
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|208391744|gb|DC942306.1|DC942306
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|208387457|gb|DC949242.1|DC949242
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGTTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|162236146|gb|FC411135.1|FC411135
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GGAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|18362764|gb|BJ194835.1|BJ194835
genomic: GGAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|100356264|gb|BY946277.1|BY946277
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|162236145|gb|FC411134.1|FC411134
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: ACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG G-TTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|100373887|gb|BY967842.1|BY967842
genomic: ACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAAEST: gi|100405482|gb|BY955547.1|BY955547
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
EST: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAG GTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
genomic: GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaa ... ctcattttagGTTTGGGACTTGGCAGCTCCTCCAATGGCTAACCCAGTCAGCAATCGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATGAAAACGTGCTAATATCAGCAAGTGGTGACGGCAGCATCAAGgtagttgaaaatcccttctcttgctcgccttgtcgtaagcgtgactgggctaattcaactatcaacttgctagatttgctctaaaatagtcactaatatt
- - - - - - - - - - - AGCAAG