1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgttgcgatctttgtcatgatgagagaatcttttcgtgactttgttttgttgaatagactgaagaatgtataccttatcagtccatacatactt...
species | Physcomitrella patens |
transcript | PP1S391_72V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|162227005|gb|FC402543.1|FC402543
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|162152368|gb|FC328555.1|FC328555
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|100396758|gb|BY953812.1|BY953812
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: TCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGGTGGAAGGT-CAGG GCATATTGCTGCAGCATGTCCAGTGGAGGCATTATGCCGGAACTGCAAGA
genomic: TCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTG-TGGA-GGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgttgcgatctttgtcatgatgagagaatcttttcgtgactttgttttgttgaatagactgaagaatgtataccttatcagtccatacatactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG