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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTCCCGTAGCCGTGGCAACATATGCAGCATACGGAGCGCAGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatcggtactgtgtgtgtgtgtgtgggccctgcgtctggttttgttgtggagctggggcgtttgtgatttctttggtgattaagcgatcatgat...

Basic information

species Physcomitrella patens
transcript PP1S391_69V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162237963|gb|FC412551.1|FC412551
EST:     AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC                         ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: gi|162209849|gb|FC385991.1|FC385991
EST:     AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC                         ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: gi|162191668|gb|FC367713.1|FC367713
EST:     AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC                         ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: gi|162152976|gb|FC329278.1|FC329278
EST:     AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC                         ATATTCGTGGGAGGACTTGACCCAGCGGTTGGCGACGAAGACTTGAGGAAC
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC