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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGCTAAGGCACGCCACTCCAACGGACAGGGGCGTTGGCCCGTGAAGTCTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctgaatgccaatttctgggtcatctggaaaactcacatgctcagagttgtatgtgtaaaattctcactttccgcttgggatttaggcactgatctagcgattaattgtgatgctctgacgtttgtag

Basic information

species Physcomitrella patens
transcript PP1S38_376V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823698|gb|BJ581764.1|BJ581764
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37832499|gb|BJ590511.1|BJ590511
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162203216|gb|FC379313.1|FC379313
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37849607|gb|BJ607615.1|BJ607615
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|7067215|gb|AW497070.1|AW497070
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162248381|gb|FC420906.1|FC420906
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18370115|gb|BJ201717.1|BJ201717
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37841187|gb|BJ599195.1|BJ599195
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162202837|gb|FC379819.1|FC379819
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162237079|gb|FC413238.1|FC413238
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18368504|gb|BJ200589.1|BJ200589
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37850940|gb|BJ608948.1|BJ608948
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162251657|gb|FC426063.1|FC426063
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162276406|gb|FC452656.1|FC452656
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162271900|gb|FC448110.1|FC448110
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162237080|gb|FC413239.1|FC413239
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|7286822|gb|AW599309.1|AW599309
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162213580|gb|FC389452.1|FC389452
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37848210|gb|BJ606218.1|BJ606218
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162177226|gb|FC352655.1|FC352655
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18344500|gb|BJ176540.1|BJ176540
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162202838|gb|FC379820.1|FC379820
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162248380|gb|FC420905.1|FC420905
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162217445|gb|FC393121.1|FC393121
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162177227|gb|FC352656.1|FC352656
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18364022|gb|BJ196095.1|BJ196095
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|7207253|gb|AW561256.1|AW561256
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18360355|gb|BJ192417.1|BJ192417
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162163828|gb|FC340362.1|FC340362
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162272416|gb|FC449055.1|FC449055
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162196966|gb|FC373332.1|FC373332
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162203215|gb|FC379312.1|FC379312
EST:     TTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18371592|gb|BJ203194.1|BJ203194
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCANAN                         GTGAANGGTCTTGATGTANACACTCTCGTANTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18331060|gb|BJ163066.1|BJ163066
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCANAG                         GTGAAGGGTCTTGATGTANACACTCTCGTAGTCTCTCACATTCA
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCA
EST: gi|37851774|gb|BJ609782.1|BJ609782
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162217446|gb|FC393122.1|FC393122
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162269116|gb|FC444984.1|FC444984
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162271899|gb|FC448109.1|FC448109
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|18355556|gb|BJ187615.1|BJ187615
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|37838498|gb|BJ596506.1|BJ596506
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162251656|gb|FC426062.1|FC426062
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
EST: gi|162262697|gb|FC438479.1|FC438479
EST:     CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAG                         GTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC
genomic: CTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctga ... acgtttgtagGTGAAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGGCTAAGGCACGCCACTCCAACGGACAGGGGCGTTGGCCCGTGAAGTCTGCTACCTTCTTGCTTGGTTTGCTGAAGAATGCCGAGAGCAACGCAGAGgtacgcctgaatgccaatttctgggtcatctggaaaactcacatgctcagagttgtatgtgtaaaattctcactttccgcttgggatttaggcactgatctagcgattaattgtgatgctctgacgtttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA