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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttcatactacaattctggctgcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta...

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatccttt-----catactacaattctggctgcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta----
  || || || || ||| | || |||||| |  | || | ||| |||||||||||||||||||| ||||||||||| |  || ||| ||||||||||||||     | |  ||  ||  |   |  |   |     |    |  || |   | | |        |  | ||    ||  ||  |   |  |     |    
AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttttgttctttgtatcatgatatttatgcatttcctcgtaaattctggttattatactatatatttgttattatcatactgtatgccttaatagtacattag

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttca-----tactacaattctggctgcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta----
  || || || || ||| | || |||||| |  | || | ||| |||||||||||||||||||| ||||||||||| |  || ||| |||||||||||||| |     |  ||  ||  |   |  |   |     |    |  || | | | | ||       |  | ||    ||  ||  |   |  |     |    
AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTgtgagatttgtatccttttagttctttttatcatggtatttatgcatttcctcgtaaattctggttgttataccatatctttattattatcatactgtatgccttaatagtacattag

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttca--tactacaattctggctgcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta
  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || ||||||||||||    || |   ||  |   |  || |      |  |  || ||||| |  |                  |||     |   ||   | |    
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatccttttgtttattgatatcttaattaggttaattcaggcatggagcgatggtttagtgaatgggaataacgataattgattattactgcaattaaa--

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatccttt-catactacaattctggct-gcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgt-gctgaccta
  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||||||||||| | ||     ||  |   | || | ||  || ||  | |   |  | | ||   |  |      |  | ||| |  ||   ||| | | | || 
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatatcttaattagcttaat--tcaggcatgaagaaatgatttgggagtgtgaataatgagaatt-gatttgactgtagttaaactt

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatccttt-catactacaattctggct-gcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgt-gctgaccta
  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||||||||||| | ||     ||| |   | || | ||  || ||  | |   |  | | ||   |  |      |  | ||| |  ||   ||| | | | || 
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaat--tcaggcatgaagaaatgatttgggagtgtgaataatgagaatt-gatttgactgtagttaaactt

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttcat--actacaattctggctgcgtgatggtc----tgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta
  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||||||||| || || | ||| || || || |||||||||  |  || | |  |  || |     ||| |     ||| |||       |   |          | | ||| | |||  | | |||    |      
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACCCCGAAATATCGCTTTGTTGTTCGTTTCgtatccttttgttaacgatatcttaggttaatctatgcttgacatggattttagaggaggaataatgaga--attgattttggttattgctaggtaaatttg----

upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 5'ss of exon 3
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatccttt-catactacaattctggctgcgtgatggtctgggttta--gtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta
  || || || || ||| | || ||||||||  ||| ||  || || ||||||||||| ||||| ||||| || || | ||| |||||||||||||||||    || || |||  |   | | | ||  |   | |||    |  ||| |      ||   || ||   || ||  |      | |  ||     
AGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTgtatccttaatttattataataatatttccataattcttctgatttccccttgtggttcaataagctaggttgtcgaggcttctgtcaacctcttttgtt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374993|gb|DC956403.1|DC956403
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACTTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208389889|gb|DC937720.1|DC937720
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18354041|gb|BJ186096.1|BJ186096
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18351731|gb|BJ183783.1|BJ183783
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18355260|gb|BJ187319.1|BJ187319
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     AGGATAAGAACAAGTACAACACCCTGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|19779720|gb|BQ039469.1|BQ039469
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|19788553|gb|BQ040790.1|BQ040790
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18351584|gb|BJ183636.1|BJ183636
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|19781204|gb|BQ039665.1|BQ039665
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|100430202|gb|BY959750.1|BY959750
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18347759|gb|BJ179806.1|BJ179806
EST:     GTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: GTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18373232|gb|BJ204834.1|BJ204834
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18329908|gb|BJ161914.1|BJ161914
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|19788241|gb|BQ040741.1|BQ040741
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     AGGATAAGAACAAGTACAACACCCTGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|18347318|gb|BJ179364.1|BJ179364
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|15728298|gb|BI740717.1|BI740717
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC
EST: gi|100431327|gb|BY960140.1|BY960140
EST:     AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT                         ACCAACAAAGACTTTGNTGCGCAAATCACCTATGCGACGCTCGCTGTAGAC
genomic: AGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 26 (downstream exon)
Score: 35

CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttc ... aatcttctagACCAACAAAGACATTGTTGCGCAAATCACCTATGCGACGCTCGCTGGAGACATCGTCCTCACCTCTGCCTATGCCCACGAGCTCCCTCGATATGGTTTGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatcctttcatactacaattctggctgcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgtgctgaccta

- - - - - - - - - - - - - - - - - - - - - - -  AAGAAC