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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgcttctgaacaaggattgttgtacgaatcttttgaaatggttagtccaaagccactagcaattcatgaaagctatggtggaaaagctagtgcatattgaagtgactttttgttatcatccaactagcccatccaattgtcacttggccgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S38_328V6.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152196|gb|FC328175.1|FC328175
EST:     GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
genomic: GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
EST: gi|208397759|gb|DC911996.1|DC911996
EST:     GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
genomic: GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
EST: gi|7648245|gb|AW739228.1|AW739228
EST:     GGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCATACAATTACATTGAAAGATTCT
genomic: GGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
EST: gi|100370853|gb|BY948549.1|BY948549
EST:     GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
genomic: GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
EST: gi|162267081|gb|FC443312.1|FC443312
EST:     GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
genomic: GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT
EST: gi|100440896|gb|BY962384.1|BY962384
EST:     GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAG                         GTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAGGATTCT
genomic: GTTGCATTGTCTTACGGTTTGTGCGTGGGCAATTCGACCCCTCGTCCAAGgttagtttgc ... ccgtgtgcagGTGACGGTTGGCGCGTCGTTTCTTTCTCAGACAATTACATTGAAAGATTCT