1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactactttctcacgctggttttcttcttggcctgactgagtgattctttcacaacgtgtgcgaacgtgaaagaaagcaatcgcttgtgattgtgcatt...
species | Physcomitrella patens |
transcript | PP1S37_304V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGATTCATGTGATANAGANCGAATCGACAAGGCAGCGAGCGAGTT-CAN CAA-TCATAAACGATCC-CTGATGAGEST: gi|162172685|gb|FC348066.1|FC348066
genomic: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactacttt ... tgtgttgcagCAAATCATAAACGATCCACTGATGAG
EST: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAG CAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCAEST: gi|18362447|gb|BJ194517.1|BJ194517
genomic: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactacttt ... tgtgttgcagCAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCA
EST: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAG CAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCAEST: gi|18365645|gb|BJ197722.1|BJ197722
genomic: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactacttt ... tgtgttgcagCAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCA
EST: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAG CAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCA
genomic: TCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactacttt ... tgtgttgcagCAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAGgtactactttctcacgctggttttcttcttggcctgactgagtgattctttcacaacgtgtgcgaacgtgaaagaaagcaatcgcttgtgattgtgcatt
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