1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TATCTAGGTTTTGCGTCTCACGACGAGTACTGCACACCCCGTGTCCTCGAATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatccccctccttttatttatttatttatttattttttatttttttaattcttttaggtgtaggattacgtgctgtgaatgtcatatccatttgtgttctcgttgactattcgtgaacgctttctgtcgacatttttcaaaaaatttgtacagcagcgtaatgctcatcacttcccggttttaaatttctgcag
species | Physcomitrella patens |
transcript | PP1S377_35V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTG GCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTGEST: gi|100441860|gb|BY981083.1|BY981083
genomic: ATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatcc ... atttctgcagGCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTG
EST: TTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTG GCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTGEST: gi|162250874|gb|FC426918.1|FC426918
genomic: TTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatcc ... atttctgcagGCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTG
EST: CGCTTGCTCAGCTCGTGTGGATGGTG GCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTGEST: gi|162247285|gb|FC421406.1|FC421406
genomic: CGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatcc ... atttctgcagGCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTG
EST: ATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTG GCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTG
genomic: ATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatcc ... atttctgcagGCACAACTCTTCTCCACAATGAGCTTGAGGAGTTGGTTGCAAAGTACGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTAGGTTTTGCGTCTCACGACGAGTACTGCACACCCCGTGTCCTCGAATCATTGAACAAGTATGGTGCTAGCGCTTGCTCAGCTCGTGTGGATGGTGgtaggtatccccctccttttatttatttatttatttattttttatttttttaattcttttaggtgtaggattacgtgctgtgaatgtcatatccatttgtgttctcgttgactattcgtgaacgctttctgtcgacatttttcaaaaaatttgtacagcagcgtaatgctcatcacttcccggttttaaatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC