1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCAACAGTATTCGACGTAGTGACAGGAAAGAAGCCTGTGAAGGACAAGCCTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTGgtgagtgctgaaaaagtaaatacccaaccatcttctgatgagtgtgcggacttcttgtttcttttcaaagatcctagagcttgttgttagaaggttcagg...
species | Physcomitrella patens |
transcript | PP1S371_53V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTG GAAGTGGCTCAAGCTAAGCCTGCCAAGCCTGTTCCACCAATTCAAAAAGATEST: gi|37829203|gb|BJ587215.1|BJ587215
genomic: CTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTGgtgagtgctg ... tgtcttccagGAAGTGGCTCAAGCTAAGCCTGCCAAGCCTGTTCCACCAATTCAAAAAGAT
EST: CTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTG GAAGTGGCTCAAGCTAAGCCTGCCAAGCCTGTTCCACCAATTCAAAAAGAT
genomic: CTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTGgtgagtgctg ... tgtcttccagGAAGTGGCTCAAGCTAAGCCTGCCAAGCCTGTTCCACCAATTCAAAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAACAGTATTCGACGTAGTGACAGGAAAGAAGCCTGTGAAGGACAAGCCTGCTGTTAATAATTCCTCTGGCACCAAAACCAAGTCCGCTACGAAGGTGgtgagtgctgaaaaagtaaatacccaaccatcttctgatgagtgtgcggacttcttgtttcttttcaaagatcctagagcttgttgttagaaggttcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa