1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGGCGTATATCATGGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAGgttcgtttatccttccttagttgaccaaaacattcgctctcaaatgctctatcctactgcgcctaaacctagaatcgaattttaagataactgattttcttttctggagcag
species | Physcomitrella patens |
transcript | PP1S366_17V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTCCAGGCATCAG TATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTCEST: gi|162277893|gb|FC454356.1|FC454356
genomic: CCTCCAGGCATCAGgttcgtttat ... tctggagcagTATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTC
EST: GGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAG TATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTCEST: gi|208368770|gb|DC951336.1|DC951336
genomic: GGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAGgttcgtttat ... tctggagcagTATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTC
EST: GGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAG TATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTCEST: gi|208365980|gb|DC955499.1|DC955499
genomic: GGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAGgttcgtttat ... tctggagcagTATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTC
EST: ACCAGAATATCCGTATAAACCTCCAGGCATCAG TATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTC
genomic: ACCAGAATATCCGTATAAACCTCCAGGCATCAGgttcgtttat ... tctggagcagTATGATTACACCAAATGGGCGATTTGCAACTCAGAAGCGGATCTGTATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCGTATATCATGGCAAAGTTAAATTTCCACCAGAATATCCGTATAAACCTCCAGGCATCAGgttcgtttatccttccttagttgaccaaaacattcgctctcaaatgctctatcctactgcgcctaaacctagaatcgaattttaagataactgattttcttttctggagcag
- - - - - - - GCAAAG