1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TATGGAAAAATTGGATTTTCTGACAAAACTGTGACAGCACGCAACATTATCATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaactatcatcgttgatactttagatgctttcaaatcttgtattgccgcgataagaacaaaatctgattcatatggaggatgctcag
species | Physcomitrella patens |
transcript | PP1S35_94V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATG GAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCGEST: gi|162167619|gb|FC343751.1|FC343751
genomic: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaact ... ggatgctcagGAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
EST: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATG GAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCGEST: gi|162166909|gb|FC343294.1|FC343294
genomic: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaact ... ggatgctcagGAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
EST: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATG GAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCGEST: gi|162170369|gb|FC346774.1|FC346774
genomic: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaact ... ggatgctcagGAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
EST: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATG GAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCGEST: gi|162189578|gb|FC365800.1|FC365800
genomic: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaact ... ggatgctcagGAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
EST: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATG GAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
genomic: CATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaact ... ggatgctcagGAAAGACGGTGTTCACGAGTGACCATGCGTTGAAGCTGGAGTGGATTCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGAAAAATTGGATTTTCTGACAAAACTGTGACAGCACGCAACATTATCATTGCAACTGGTTCGGTGCCTTTTGTTCCTCCAGGAATTGAAGTTGATGgtaagaaactatcatcgttgatactttagatgctttcaaatcttgtattgccgcgataagaacaaaatctgattcatatggaggatgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG