1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcgtttgttttggatccttatctaaagcactgcgtgcacagttgattcctgcatcgctagattacccagttttctagacatttcttgcaatcg...
species | Physcomitrella patens |
transcript | PP1S35_251V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAG TGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATAEST: gi|100438862|gb|BY961841.1|BY961841
genomic: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcg ... gtggtggcagTGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATA
EST: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAG TGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATAEST: gi|162179957|gb|FC356028.1|FC356028
genomic: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcg ... gtggtggcagTGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATA
EST: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAG TGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATAEST: gi|100438179|gb|BY961693.1|BY961693
genomic: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcg ... gtggtggcagTGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATA
EST: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAG TGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATA
genomic: TGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcg ... gtggtggcagTGGAGAACGTAGATGAGGCAAGACGAGCCCGTTTAATTGAGCTCCTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAGATTCCTTTGCAAGGTGACTTCTCGGCTGAGCACATGATTTTTGGAGgtaaagttcgtttgttttggatccttatctaaagcactgcgtgcacagttgattcctgcatcgctagattacccagttttctagacatttcttgcaatcg
- - - - - - - - - - - - - - - - - - - - - - - TTGGAG