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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctctaccttcagtcccaggtgctatttctgctctctccctggtacatgcttgggaggagttgcattcatggcatctgggcattagttgcacgtca...

Basic information

species Physcomitrella patens
transcript PP1S34_430V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18348984|gb|BJ181033.1|BJ181033
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100429526|gb|BY959607.1|BY959607
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|22492619|gb|BU052542.1|BU052542
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100437122|gb|BY961362.1|BY961362
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100418156|gb|BY993361.1|BY993361
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100422700|gb|BY957957.1|BY957957
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100440809|gb|BY980629.1|BY980629
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|208377833|gb|DC940945.1|DC940945
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100424688|gb|BY976765.1|BY976765
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
EST: gi|100440735|gb|BY980555.1|BY980555
EST:     AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG                         ATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG
genomic: AATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctcta ... tgtggaacagATTTTCTTACTGTGCAATCTGCTGCCTTTCTTTGCTGAAGCGACTCGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCGgtatgctctaccttcagtcccaggtgctatttctgctctctccctggtacatgcttgggaggagttgcattcatggcatctgggcattagttgcacgtca

- - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC