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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGACTGGGGCTGGCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtggctgtgtggcatgcggcgaagcggttgagggtgattgtggaggcgtggatggaacgtgggcgtgggatggatgggtggatagcatgtgtgtgggggcgtggtggattcatggttgtggtggtccgcaatgctgaaacggggtgtggtggtgtgagatttcag

Basic information

species Physcomitrella patens
transcript PP1S348_15V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827533|gb|BJ585545.1|BJ585545
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208390694|gb|DC937850.1|DC937850
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAANCAAGCGTTTGATGAGGCGATCGCG-ANCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162269401|gb|FC445269.1|FC445269
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162241149|gb|FC417768.1|FC417768
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67725735|gb|BJ975994.1|BJ975994
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208385562|gb|DC937107.1|DC937107
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67727562|gb|BJ977821.1|BJ977821
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162207491|gb|FC383736.1|FC383736
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162241150|gb|FC417769.1|FC417769
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67726117|gb|BJ976376.1|BJ976376
EST:     GCGTTGAATTTTCCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67726885|gb|BJ977144.1|BJ977144
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162270401|gb|FC447101.1|FC447101
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67718418|gb|BJ968677.1|BJ968677
EST:     GCGTTGAATTTTTCGGTGTTTTATTACNANATTTTGAACTCCCCCNANCG                         ANCATGCCATTTGNCNAANCAAGCGTTTGATGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGA
EST: gi|37840320|gb|BJ598328.1|BJ598328
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67719261|gb|BJ969520.1|BJ969520
EST:     GCGTTGAATTTTTCGGTGTTTTATTACNAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAANCAAGCGTTTGATGANGCGATCGCGGANCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67725283|gb|BJ975542.1|BJ975542
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208345060|gb|DC925641.1|DC925641
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208362548|gb|DC943747.1|DC943747
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67716763|gb|BJ967023.1|BJ967023
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208358628|gb|DC949963.1|DC949963
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|7207565|gb|AW561613.1|AW561613
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|18341253|gb|BJ173287.1|BJ173287
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|37849430|gb|BJ607438.1|BJ607438
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162249893|gb|FC425694.1|FC425694
EST:     GTGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67726399|gb|BJ976658.1|BJ976658
EST:     GCGTTGAATTTTCCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|100373556|gb|BY948980.1|BY948980
EST:     GCGTTGATTTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAGGCGTTTTGATGAG-CGATCGCGGAGCTGG
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTT-GATGAGGCGATCGCGGAGCTGG
EST: gi|37852754|gb|BJ610762.1|BJ610762
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208387877|gb|DC929221.1|DC929221
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAACCAAGCGTTTGATGANGCGATCGCGGANCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162269402|gb|FC445270.1|FC445270
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|37830224|gb|BJ588236.1|BJ588236
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162270400|gb|FC447100.1|FC447100
EST:     GCGTTGAATTNTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCNGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|67691435|gb|BJ951668.1|BJ951668
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208365445|gb|DC950912.1|DC950912
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|18339751|gb|BJ171778.1|BJ171778
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGANCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|18338400|gb|BJ170424.1|BJ170424
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162206220|gb|FC382290.1|FC382290
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|37846290|gb|BJ604298.1|BJ604298
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|162207492|gb|FC383737.1|FC383737
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
EST: gi|208354137|gb|DC957385.1|DC957385
EST:     GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCG                         AGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA
genomic: GCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 18

ACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGACTGGGGCTGGCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACTCCCCCGAGCGgtaagagtgg ... gagatttcagAGCATGCCATTTGGCGAAGCAAGCGTTTGATGAGGCGATCGCGGAGCTGGATACGTTGAGCGAGGAGTCGTACAAGGACAGCACGTTGATCATGCAGCTA




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