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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTGTCTGTTGGATTTACACTGGATCAAATTCCAAATGATATCACGAGGAAAACTCCAGCCAGTTTCGAGCCCTCGATTGATTACGTTGTCACTAAGgtacagtattcatcttccaatgtgttttgtgacctgtttgattggagacattgttcatttttaatgcactaggatgtcatcatgctgaaatgaatacactaactcatcggatttcgtgtctttttggagttttacag

Basic information

species Physcomitrella patens
transcript PP1S343_21V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S343_21V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 1
GAAACTGTCTGTTGGATTTACACTGGATCAAATTCCAAATGATATCACGAGGAAAACTCCAGCCAGTTTCGAGCCCTCGATTGATTACGTTGTCACTAAGgtacagtattcatcttccaatgtgttttgtgacctgtttgattggagacattgttcatttttaatgcactaggatgtcatcatgctgaaatgaatacactaactcatcggatttcgtgtctttttggagttttacag
 || || ||||| || | |||  |||| || |||||||||||||| |||| ||| ||||| || || || ||||| || ||||| ||||| |||||||||||      ||  | || |  | |||||       |  |||      | || ||   || |||  ||||||  |   |  |     |    |  || |  ||  | |   | | || ||                   
AAAGCTCTCTGTAGGTTATACTTTGGACCAGATTCCAAATGATATTACGAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGACTACGTGGTCACTAAGgt------ttgctttttccctctgtttctaagatttcttg------ggcaatg---atatttggtgcactgtgcaattgttgcattt---ttcatcc-ttattttagaagctatcttgc------------------

upper sequence: PP1S343_21V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAACTGTCTGTTGGATTTACACTGGATCAAATTCCAAATGATATCACGAGGAAAACTCCAGCCAGTTTCGAGCCCTCGATTGATTACGTTGTCACTAAGgtacagtattcatcttccaatgtgttttgtgacctgtttgattggagacattgttcatttttaatgcactaggatgtcatcatgctgaaatgaatacactaactcatcggatttcgtgtc----tttttggagttttacag-----
 ||  |||||||||| | |||  ||||||| ||||| |||||||||||||||||||| || || || ||||||||||| || ||||| || || ||||||||     ||||          |  || | ||   ||    ||  || ||  |   | ||    ||  ||    || |   ||       ||  ||| ||| |     |  |||| |  |     | | |     |||||       
CAAGTTGTCTGTTGGCTATACCTTGGATCAGATTCCTAATGATATCACGAGGAAAACACCGGCTAGCTTCGAGCCCTCCATCGATTATGTGGTGACTAAGgtttgtcattccatacttttggctttatttgtgttgcgaaatgagatacgcttgactttgaagatttacacacatctatccacttcatgatatataaactcaaatg-catattttgcttaacgatatctatttctttaccatgcag