1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGGATGTCAAGGTTCAGGTGTGAAGGTCTCAGTGCGTCAGCTCGGCCCTGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatgactttttccaacctccaacctccagacattttattctctctttcgttctttatccgtctctttcataaataaaagatatggttccttgtggtgattggcgcattgcccgtgacgttttgagctttaggagtcaactaatttagttcatcgcgattgtag
species | Physcomitrella patens |
transcript | PP1S342_16V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|100401219|gb|BY990892.1|BY990892
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|100414304|gb|BY992711.1|BY992711
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|19778134|gb|BQ039262.1|BQ039262
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162219007|gb|FC395200.1|FC395200
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: AGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162191909|gb|FC366914.1|FC366914
genomic: AGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162189947|gb|FC365611.1|FC365611
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162177365|gb|FC352898.1|FC352898
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCCAGGGACAAAAGGEST: gi|162242594|gb|FC414985.1|FC414985
genomic: TGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|100357768|gb|BY946564.1|BY946564
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|19790827|gb|BQ042076.1|BQ042076
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TAAATGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162152418|gb|FC327981.1|FC327981
genomic: TAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162157608|gb|FC332930.1|FC332930
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|208382913|gb|DC928338.1|DC928338
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: GGTATGATACAGCAGATGCAACACGTCTGCCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162185740|gb|FC362088.1|FC362088
genomic: GGTATGATACAGCAGATGCAACACGTCTG-CCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|208358989|gb|DC957737.1|DC957737
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162254102|gb|FC429626.1|FC429626
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGGEST: gi|162162054|gb|FC338845.1|FC338845
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
EST: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTG GCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
genomic: TGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatga ... gcgattgtagGCGAAACAATTGTTGAAAAGGATAGGTGCGGACAATGCAAGGGACAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGATGTCAAGGTTCAGGTGTGAAGGTCTCAGTGCGTCAGCTCGGCCCTGGTATGATACAGCAGATGCAACACGTCTGCCCCGATTGTAAAGGATCTGgtaagcatgactttttccaacctccaacctccagacattttattctctctttcgttctttatccgtctctttcataaataaaagatatggttccttgtggtgattggcgcattgcccgtgacgttttgagctttaggagtcaactaatttagttcatcgcgattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG