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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatactttggctgttcaatcaaagcgtcagagattttgagcgatactgcttcttgaattcttcatcgtttgaagagtaacaaataaaagtttggtggaactgcag

Basic information

species Physcomitrella patens
transcript PP1S341_73V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386514|gb|BY951310.1|BY951310
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|100406162|gb|BY991570.1|BY991570
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCANAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162185274|gb|FC361784.1|FC361784
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162173953|gb|FC349753.1|FC349753
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162187116|gb|FC362898.1|FC362898
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162158810|gb|FC335333.1|FC335333
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|100435045|gb|BY979058.1|BY979058
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|100446505|gb|CJ970804.1|CJ970804
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162165683|gb|FC342250.1|FC342250
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162193527|gb|FC370430.1|FC370430
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|100389902|gb|BY971254.1|BY971254
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162171492|gb|FC346767.1|FC346767
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162151892|gb|FC328138.1|FC328138
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGC
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGC
EST: gi|67568954|gb|BJ941778.1|BJ941778
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
EST: gi|162157215|gb|FC332849.1|FC332849
EST:     GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAG                         TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA
genomic: GTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatac ... ggaactgcagTGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAAATTTTATTCTGCAGCGTGATGGATATCCTAGgtgaacatactttggctgttcaatcaaagcgtcagagattttgagcgatactgcttcttgaattcttcatcgtttgaagagtaacaaataaaagtttggtggaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA