1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggacttgagcagttgagatgactttcatgttcgttcaattttttctctttctttgtaacataattatcgtccctcggttgattttgatttccgtaa...
species | Physcomitrella patens |
transcript | PP1S340_38V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATEST: gi|67691703|gb|BJ951936.1|BJ951936
genomic: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggactt ... tgttgaacagGGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
EST: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATEST: gi|67508482|gb|BJ941348.1|BJ941348
genomic: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggactt ... tgttgaacagGGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
EST: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATEST: gi|67695048|gb|BJ955281.1|BJ955281
genomic: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggactt ... tgttgaacagGGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
EST: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATEST: gi|162217820|gb|FC394120.1|FC394120
genomic: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggactt ... tgttgaacagGGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
EST: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
genomic: ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggactt ... tgttgaacagGGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGgtgaggacttgagcagttgagatgactttcatgttcgttcaattttttctctttctttgtaacataattatcgtccctcggttgattttgatttccgtaa
- - - - - AAGGAG
- - - - - - GGAGCA
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - TGAAGC