ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag

Basic information

species	Physcomitrella patens
transcript	PP1S337_26V6.1
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttag-ttgcatgcataatctgatttttatattacttttttg-cattttatctgcattttgacgtgttggggtttttgcag
||||   ||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||  | || || || || |||||||||||||||   |||      |||| ||  | || | ||| | ||      |||| |   ||   ||     |||| | |  |||| |     || |   |         
ACCAAGCAGCATGAAGATCAAGGTGGTGGCACCGCCTGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTTAGCACCTTCCAACAGgtaaaccttacgc-ctacactttatgaggtagcaagaatgcaggtatttctgctttctgttaacatcattcttttggcatct----atgctacag---------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgca-ttttatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| |||||||| || || || || |||||||||||||| ||||| ||||| || || |||||||||||||| || ||||| ||||||  | |   |   | |||     |||| |  |  |     |||  || ||   | ||  || || | ||   |||  ||  |                   
TCCTAGCAGCATGAAGATCAAGGTGGTCGCCCCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCTCTCAGCACATTCCAGCAGgtaaatatacaaa--tgcagcaatgtagt-gtgtttacctcatgaacttgat-caatttgcttacaatgttgcttgccgttgcag------------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttctt--ttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcat---tttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| ||||| || || ||||||||||||||||||||||| ||||| ||||| || ||  | |||||||| || |||||||| |||||| | |    | ||   ||||||  ||  |   |  | |  |    | ||        || ||  |||   ||| | | | ||||   |||  |            
GCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcag------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os12g06660.1 (Oryza sativa), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgc-ataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag---
 ||    ||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || || || ||  | || || || || |||||||||||||||    ||| || |   | |  ||  ||| ||| | || |   | |||   | ||  | |  |  | ||||| |  | ||||||    |  | || | | |    
GCCGAGCAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGTGTCTGGATTGGTGGATCCATCCTTGCCTCCCTTAGCACCTTCCAACAGgtaaaattttgat-tactactccctccgtttcatactatgagtcgctttgactttttttctaatcaaatttattta-agtttgac----taagtttatagaaaaat

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttt------tgcattttatctgcattttgacgt--gttggggtttttgcag------------------------------------------------
 |||   ||||||||||| ||||| || || || || ||  | ||||||||||| |||||||||||||||||  |||| |||||||| |||||||| ||||||  || ||   ||||||| | ||||| |||   |   |  |  ||  || | |||||  |      | |||||| | |   | |  ||      | |  ||||    |                                                
TCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCACCTGAACGCAAGTACAGTGTCTGGATAGGAGGGTCTATCCTGGCTTCTCTCAGCACCTTCCAGCAGgtaagtccttatcattacagcttcttagatgctcaccagaattagttcata-actacttcataaccaatccattttgtttatttgtccacaccaagttgtattttaatggttttgctaatgcacatgtgatttgtttgcttggcattgataaaaacag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 5'ss of exon 4

ACCATCG-AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttctt-ttatattacagttgctta-gttgca--tgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 || | | || |||||||| ||||| || || |||||||||||||| |||||||| ||||| || || || ||  |||| |||||||||||||| || |||||||   || |   | | ||  | |||  ||| ||  ||| |||   ||||   | | ||  | | |  | |  || |  | |     || |    |         
-CCCTGGCAGTATGAAGATCAAGGTAGTTGCACCGCCAGAGAGGAAATACAGTGTCTGGATTGGTGGTTCCATCCTGGCTTCTCTCAGTACCTTTCAGCAGgtatccattgtctcaatgcatatacttttgtttcatctgcttaacgagattaccaaactatgtgtct-taatgcatttttagtccattgtctgcaagacac-----

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag--
||||   ||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| |||||  | || || ||||| || |||||||||||| ||   |   |||    ||  ||    |  | |||    ||   ||  || |  | |   |||||   |      |  |  ||  |||  |||  |||   
ACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGgtacttgcat-gcattctctttaattctgggggttcatggcatg---ttggtacttatctgcagcattcatttaattctggggagtcctggcatttgggcacct

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 3

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||||| |||||||| || || |||||||||||||||||||| ||||| ||||| || ||  ||||||| ||||| |||||||| ||||||   |    | |  |   | || |       | |  ||||    | |  |   ||  |||||| ||    |||||                         
TCCCAGC-AGCATGAAGATCAAGGTGGTCGCTCCTCCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaacaaacaaatttcgcattcgcatttcctcaatcaaggtctgct--cacgattttgc-ttgcgactgcag------------------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgca-tgcataatctgattt--ttatattactttt----ttgcattttatctgcattttg-----acgtgttggggtttttgcag
||||   ||||||||||| ||||| || || ||||| ||||||||||||||||| |||||||||||||| ||  | || || ||||| || ||||||||||||| | |||| |||    |||  | || ||||   | | || |  |||   | |||||         |   ||    |||| ||| ||     | |||     | |||  |||
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtt--tcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G110378_T04 (Zea mays), 5'ss of exon 5

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatt--tcttttatattac----agttgcttagttgcatgcataatctgatttttatattacttttttgca-ttttatctgcattttg--acgtgttggggtt--tttgcag-
||||   ||||||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||  | || || ||||| || |||||||||||||   |  |||||||| |    || ||||    |  ||   |  |    |    ||||  ||       | |    |||| ||| ||  | | | ||   ||  ||| |   
ACCAAGCAGCATGAAGATCAAGGTCGTCGCGCCACCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgggttgtttatattgctttcagctgctgcacttgatttctttttaactcccaatatggctgaaacaaagtcacgtctgaattctgttatgcgatgccattgatttaccag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G047055_T04 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattt-tatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| |||||||| || || ||||| |||||||||||||| ||||| ||||| || ||  ||||||| ||||| |||||||| ||||||        |     |||  ||  |     |   | ||    |||   || |  |    |   || | || |||| |       || |    | |  ||||
TCCTAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCAGAAAGGAAGTACAGTGTCTGGATTGGAGGATCCATCCTGGCATCGCTCAGCACCTTCCAGCAGgtaaacaa---acgcagcagcggccaaaaaataaaaaaaacgc-attccgatttccccaaatccgatctatacctgcttacgattttgcttccatct--gcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G437445_T01 (Zea mays), 5'ss of exon 5

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttt-tttgcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||| | |||||||| || | ||||||||||||||||||||| ||||| || || || ||| |||| || |||||||||||||| |||||  ||    | |   |   |   | ||  |  |   |    || | |  |   || | | |||| | |||  ||   | |||   |  ||  ||        
CCCCAGC-AGCATGAAGGTGAAGGTGGTTGCTCTGCCAGAGAGGAAGTACAGTGTTTGGATTGGTGGTTCCATTCTGGCCTCCCTCAGTACCTTCCAGCAGgttgttaccctctcaaaatctaaatgagacgttt---ttgcttgctctgcaagctattgtatttgaaatttgacttagtcttgttattgtgttgtag------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G053284_T01 (Zea mays), 5'ss of exon 4

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagt-tgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag----------
  ||| | ||||||||| | |||||||| || ||||| |||||||||||||| || ||||| || || || ||| |||| ||||||||||||||||| |||||  ||  ||| |  ||| ||  |  | | |  || ||   | |  |  ||   || |  || |  | | ||| || | |||||  | ||    || ||   |          
CCCCAGC-AGCATGAAGGTGAAGGTGGTTGCTCCGCCGGAGAGGAAGTACAGCGTTTGGATTGGTGGCTCCATTCTGGCCTCTCTCAGTACCTTCCAGCAGgttgttagtttgt--tactgtctcaaaatctaaattcaacgtttc-tgcttgctttgcagttct--agtgtatatgaagtttgatttattaatcttgttattgtgttgtgtag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G104017_T04 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatt---tcttttatat-----tacagttgcttagttgcatgcataatctgatttttatattacttttttg-cattttatctgcattttgacgtgttggggtttttgcag-----
||||   ||||||||||| ||||| || || || || ||||||||||||||||| |||||||||||||| ||  | || || ||||| || |||||||||||||    |  |||||||     | ||| ||||    | |||   |  |       | | ||   |    ||  |     || | ||| ||  ||| || ||  ||          
ACCAAGCAGCATGAAGATCAAGGTCGTCGCACCACCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgcggttgtttatatctactttcagctgctgcacttcatttgttttaactcagtaacatggttgaaatgataacacttccgaattctgttgtgatgtggcattgatgtaccag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattt----tatctgcattttga---cgtgttggggtttttgcag-----
 ||    |||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||| || ||  | || || || || ||||||||||||||       ||| |      ||  ||| |||||     |||   |  | | |   || |||  | | ||    ||||| | |  | |   | || |  ||| |||         
GCCGAGCAGCATGAAAATCAAGGTGGTGGCACCGCCTGAGAGGAAATACAGTGTCTGGATAGGAGGATCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaacttacacctttttt-tttatttgcagctgcaatggcaaatat-tgcaacctttcagtagttccagtatcttcttactaaaaacatgctctggtatttatgctacag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttata----ttacagttgcttagttgc----atgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag-------
 ||    |||||||| || ||||||||||| || || |||||||| |||||||| |||||||||||||| ||  | || || || || ||||||||||||||       |||||    ||    ||    ||||||        ||| ||  |  |||   |   |    |    | |   | | |    || || |   || |||  |        
CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttc-taaaaacatgctctcgtatttatatgctacag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G407517_T01 (Zea mays), 5'ss of exon 11

ACCATCG-AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtattt---cttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctg--cattttgacgtgttggggtttttgcag
 || | | ||||||||| | |||||||| || ||||| ||||||||||||||||| ||||| || || || ||| |||| || ||||||||||| || |||||  ||   || | | | |  |  ||    ||| | ||| |  ||||   | |||  ||   |||   |||| |  |   | | ||   ||||||  |         
-CCCTAGCAGCATGAAGGTGAAGGTGGTTGCTCCGCCGGAGAGGAAGTACAGTGTTTGGATTGGTGGTTCCATTCTGGCCTCCCTCAGTACCTTTCAGCAGgttgttaccctctcaaaatctaaatgagacgtttc-tgcttgctctgcaatctattgta---tttgaaatttgacttagtcttgttattgtgttgtag---------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G067985_T02 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttct-----tttatattac----agttgcttagttgcatgcat----aatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
||||   ||||||||||| ||||| || || ||||| ||||||||||| ||||| |||||||||||||| ||  | || || || || || ||||||||||||| |       ||||||||||    || ||||   ||  ||   |    | ||  ||| | ||   ||    |  | | | |  |   || |||||||     | |||  |||
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G439369_T01 (Zea mays), 5'ss of exon 3

-----------------------------------------------------------------------------------ACCATCG-AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTAT-GGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtattt---cttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctg--cattttgacgtgttggggtttttgcag
                                                                                    || | | ||||||||| | |||||||| || ||||||||||||||||||||||| | |||| || || || ||| |||| || ||||||||||| || |||||  ||   || | | | |  |  ||    ||| | ||| |  ||||   | |||  ||   |||   |||| |  |   | ||||   ||||||  |         
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCAATATGTTCTCTGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccagagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtacctttcagcaggttgttaccctctcaaaatctaaatgagacgtttc-tgcttgctctgcaatctattgta---tttgaaatttgacttagtctttttattgtgttgtag---------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttat--ctgcattttgacgtgttggggtttttgcag--------------------------------------
 |||   ||||||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||||| || ||  | ||||| || || || ||||| ||||||   |     | || |    |||    || || || ||||| || ||||| ||       ||||  | |     |  ||  |  |    ||  | ||||                                         
GCCAAGCAGCATGAAGATCAAGGTCGTCGCTCCGCCGGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTCGCATCCCTGAGCACATTCCAGCAGgtaacaccaa-gtcttccgacggctgttctgtatccacaatct-atgtttat-ttgtgaaaatgcacctcacggtagggttgcggagaaaaggtttatttgtgaagctactctgacattaagtccatcttttccctgtgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctga--tttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| ||||| || || || |||||||||||||||||||| ||||| ||||| || ||  | ||||| || || || || || ||||||   |     | || | |  |||    || ||  |  ||||||   | || | | |  || |  |||    |||   |||    |||  |            
GCCAAGCAGCATGAAGATCAAGGTCGTCGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTGAGCACATTTCAGCAGgtaacaccaa-gttttccggcggctattctgtatctactatctgagtctattttgtgaagttctgacataagttcttgttttccctgtgcag------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AC194350.3_FGT001 (Zea mays), 5'ss of exon 7

----------------------------------------------------------------------------------ACCATCG--AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttat-ctgcattttgacgtgttggggtttttgcag
                                                                                   ||  |   ||||||||| | |||||||| || ||||| ||||| ||||||||||| ||||| || || || ||| |||| || ||||||||||| ||  ||||  || |  | |    ||    || | |   | |  |    || ||  | |   | | | ||| |||| |   |  | || | | ||||   || || | ||
GTACGGTAATGTTGTCCTCAGTGGTGGCTCCACTATGTTCCCTGGTATTAGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCCAGTAGCATGAAGgtgaaggtggttgctccgccggagagaaagtacagtgtttggattggtggttcaattctggcctccctcagtacctttcagtaggttgttatcctgt----caaaatctaaatgagacgttt---ttgcttgctctgcaa-tctattgtatttgaaatttgacttagtcttgttattgtgtt-gtag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G321750_T01 (Zea mays), 5'ss of exon 2

-----------------------------------------------------------------------------------ACCATCG-AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTAT-GGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtattt---cttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctg--cattttgacgtgttggggtttttgcag
                                                                                    || | | ||||||||| | |||||||| || ||||| ||||||||||||||||| | |||| || || || ||| |||| || ||||||||||| || |||||  ||   || | | | |  |  ||    ||| | ||| |  ||||   | |||  ||   |||   |||| |  |   | ||||   ||||||  |         
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCACTATGTTCTCAGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccggagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtacctttcagcaggttgttaccctctcaaaatctaaatgagacgtttc-tgcttgctctgcaatctattgta---tttgaaatttgacttagtctttttattgtgttgtag---------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G126010_T01 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatt-tcttttatattacagttgcttagttgcatgcataatctgatttttatattactttt--ttgcattttatctgcattttgac-gtgttggggtttttgcag
 ||    ||||||||| | || ||| | ||||| || || |||||||||||||| ||||| || || ||||||||||| |||||||| || || || ||||| || |||||  || |  | |   | |   ||| | |   | | ||  ||  | | || ||  |   |   ||        |||||  |||||||  | |     
TCCTAGCAGCATGAAGGTTAAAGTGATTGCGCCACCTGAAAGGAAGTACAGTGTCTGGATCGGTGGCTCTATTTTGGCTTCTCTCAGCACTTTTCAGCAGgtcttctctttcttactttattctttcataagca-gtaggcttttatcattcaactcctcttcatgagaacctacagcagccttgaccatgttgggtgtgt-----

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G449479_T01 (Zea mays), 5'ss of exon 1

-----------------------------------------------------------------------------------ACCATCG-AGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTAT-GGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTC-CAACAGgtattt---cttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctg--cattttgacgtgttggggtttttgcag
                                                                                    || | | ||||||||| | |||||||| || ||||| ||||||||||||||||| | |||| || || || ||| |||| || |||||||||||  || |||||  ||   || | | | |  |  ||    ||| | ||| |  ||||   | |||  ||   |||   |||| |  |   | ||||   ||||||  |         
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCACTATGTTCTCTGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccggagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtaccttttcagcaggttgttaccctctcaaaatctaaatgagacgtttc-tgcttgctctgcaatctattgta---tttgaaatttgacttagtctttttattgtgttgtag---------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt-tatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcatt-ttatctgcatt-ttgacgtgttggggtttttgcag
 ||    ||||||||||| ||||| |||||||| || ||||| || |||||||| ||||| || || || ||  | || || |||||||| ||||| |||||| || ||   ||    |  | |  | | || |    | ||    ||   ||     || | ||| || ||   ||| || |||   |  |   || ||     
GCCGAGCAGCATGAAGATCAAGGTCGTGGCGCCTCCTGAGAGAAAATACAGTGTTTGGATTGGTGGCTCGATCCTTGCGTCGCTCAGTACGTTCCAGCAGgtacttattaacatgaccctatcgtcttgctgtaacacttatggtcttaccatggagattatatgctttcttgggtgccttattgcttttatcatgtctt-----

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA09G17040.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctg-atttttatattact--tttttgcattttatctgcattttgacgtgttggggtttttgcag
||||   |||||||| || ||||||||||| || |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||  ||  ||   ||    |  | ||  || ||| |   | ||   |||| ||||  |  || | | |  | ||| |     |  |   |||  |  |  | ||
ACCAAGCAGCATGAAAATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGgtacatcacttggctt-tgataacata--tgaatgaaatttgtgtggttttgtattgttgattctggaaactaatcagggaact--ctatttgaagaataagtag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA02G29160.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
||||   |||||||| || ||||||||||| || |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||   |  ||   || || |  | ||          |     | || |   | ||  |  ||        |  | | ||   |  |      | |||| ||
ACCAAGTAGCATGAAAATTAAGGTGGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGgtacagcacttggctt-caataacatatgaatgaaatttgaggggttctgtgaatagatgattctggaaagtg-gaaattaatcagggaattctatttgaag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA03G30110.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctg-cattttgacgtgttggggtttttgcag--
|||    |||||||| || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||||       |   |   | || | ||  ||| || |     ||| ||||  | |   ||  | || |  ||     |  |||     || |  |||    ||  
ACCGGGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCTATCTTGGCCTCCCTCAGCACCTTCCAACAGgtaaactgcatgactataaattacata--tgcctgaagctgttgaattttgaaatg--ttaatacagtacattaaataacttggta-atttgtatttcaatagca

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA05G09290.3 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| |||||||| || || || ||||| ||||| ||||| ||||| ||||| ||||| |||||||| || || |||||||||||||||| | | |  | ||  |  || ||| |    |   |  | ||| |  | |  || |  |    ||| |  ||  | |                       
CCCAAGCAGCATGAAGATCAAGGTGGTAGCACCTCCTGAGAGAAAGTATAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttctgttctttaatatgattaatgaactat-tgctttgaatgct-tgctaatgatacaaattatcgcttgagtgcag-------------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA12G06820.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgattt--ttatattacttttttgcattttatctgcattttgacgt----gttggggtttttgcag
 |||   ||||||||||| |||||||| || || || ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||||||     |||    ||   ||   || | |||||   ||| | ||||  ||| |||  |    |  | | ||  | |||  | || |      ||     |||  | 
CCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactttgc--tatgatt--ctaat-gcatg---aatttaatttctttaaattgatcaaatcaactgtagatacatccttactttctcactgtacactttagaa

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA19G32990.2 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
||||   |||||||| || ||||| || || || |||||||||||||||||||| ||||| ||||| || || ||||| || ||||| |||||||||||||||       |  | || | || | || || |      | |   |||||   ||         |||  | |  |      | |  | |      |     | 
ACCAAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGgtaaactgcatg-actataattacata-ttcctgaagcagttgaattttggaatgttaacgcagcaaataacttcggaaattatatttcaataatgagtaaa

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G04360.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgc---attttgacgtgttggggtttttgcag
 |||   ||||||||||| |||||||| || || || ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||||||    || | |  |  | |   | | ||  |||   ||  | |||| | | |   || |    ||  ||  | |   ||  ||| |  |   |   |||    
CCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacattctgtggtg-attcagtgattttaatgaccaaagtaatttgtgtttgtgttgtcaaaatgataaatccaaaatggtgatgcctcatgcacttt----

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA11G14880.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag----
 |||   ||||||||||| |||||||| || || || ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||||||    ||||    ||   || || | |        |||| |    |||| |||       ||  |    |  | || |  | || |    |   |         
CCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacgttttgc--tatgatt-ctaattcatggatttaattt---ctttaaattgagcaaatgtgtaaagtaagaatgtaaaggtttatctgccatcaagtcaaa

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA13G41060.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| |||||||| || || || ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||||||    || | |  |     |  | |      |  |   | || || |  | | |   |  |  ||   |  ||  | ||| |   |     || || |  
CCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacattctgtcgtgattctaatgaccaaagtaaaatttgtgtttctgttgtcaaaatgataaatccaaaatg-gtgttgcctcatgcactttattacg-

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA19G00850.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgc-attttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| |||||||| || || || ||||| ||||||||||| ||||| ||||| ||||| |||||||| || || |||||||| ||||| | | | |  | ||  |  ||  || ||   |  || | ||  |  ||  | | |||  |    ||   | |||    |||| |||  |            
CCCAAGTAGCATGAAGATCAAGGTGGTAGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGgtctgtttctgttctttaatatgactaattaact--attaactattgctttgaatgcttgctaatgatacaaactgtcgcttga-gtgcag------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag---------------------------------
|||    |||||||| || |||||||| || || || ||||| ||||||||||| ||||| || || ||||| |||||||| || || |||||||||||||| ||    | || ||       | |  |    |  | |  |    |   |  |  |   |||   | |  |    | |   | || || |  | |    ||                                 
ACCCAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCATCACTTAGCACCTTCCAACAGgt-ttgtactgatgttttttccccctcctattctcaacatcccccctcccacctcccccctttatgtgtacttacaagtaaaatgtattagtttatggaaagcattgagtgtttactttgttctcttatatgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtat-------ttcttttatattacagttgcttagttgcatgcataatctgatttt----------tatattacttttttgcattt---tatctgcattttgacgtgttggggtttttgcag
|||    |||||||| || |||||||| || || || ||||| ||||||||||| ||||| || || ||||| |||||||| || || |||||||||||||| |       |  |||| |  | |  ||    |  | |   | | || || | ||          | ||||| ||| | | |      |||      | |    ||||    | | || ||
ACCCAGTAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGgtttgtactgatgtttttttcctgctattctcaacatccccccctcatttgttcttacaagtaaaatgtattagtttatggaaggcaggtattgagtgtgtactttgttctcttatatgtag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA18G52780.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtat-ttcttttatattacagttgctta-gttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttt---tgcag
|||    ||||||||||| ||||| || || || || ||||| || |||||||| ||||| || || ||||| ||||||||||| || |||||||| ||||| | |||| ||   |||   ||  |   | | | || |   |    || || |   |   |      || |||    ||  ||||    |   |||||   |||||
ACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCGGAGAGAAAATACAGTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctcttcctttattctttttcctgcttcttggaatgttatgttgttgtgagatagtacattcttctatgataataatgacacacttttgttttgagtgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA02G10170.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgat-ttttatattacttttttgcattttatctgcattttgacgtgttggggtttt---tgcag
|||    ||||||||||| ||||| || || || || ||||| || |||||||| ||||| || || ||||| ||||||||||| || |||||||| ||||| | |  | |  |||    || | |  ||    | ||  | || | |  |    ||| || ||  ||  ||     | |   |||   ||  |||||   |||||
ACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCTGAGAGAAAATACAGTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctcttcatttttttt-cctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttctttta--tattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||  | ||||| ||||| |||||||| |||||  || ||||   |||| ||  |  |   || ||  | |   |  |||    |          ||  ||   | ||||                         
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag------------------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||  | || || ||||| |||||||| |||||  || |||  | |||       |||| |   ||    || ||     || |||   |||  | | | ||           || ||||  |||||| ||||
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGgtgattgtttagt-ttattacaaattagctctttgacgcatgtgccaagtagattgaattt--gaactctag---------aacatgttttggtttt-gcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| ||||| || || || ||||| || || || ||||| ||||| ||||| || ||  | ||||| ||||| ||||||||||||||  |||||||||  |  | | |||   || ||||  |  ||   |||    |||  ||  |   |  |  | ||  |||||  |                 
TCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgtgattcttttatcattaattagctc--ttccatgtgt--tccattttc---attgattgctaaaaaatgttgtg-gttttgcag-----------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag---
|||    ||||||||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || ||  | ||||| ||||| |||||||||||||||    |   | ||| |   |  |||     |     |     |||| |  |  |    |    ||  |      ||||||   |||| | || | || |    
ACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgtaaaaatccca-attccgcctctttaaa---actttcagctccatttatgaaacatgagtgaaaatactg---aaattttgttttgtttgtgtgtgtgaatcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgta---ttt--cttttatattacagttgcttagttgcatgcataatctgatttttata-ttacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 ||    ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| || || |||||  | || || ||||| || ||||| ||||||   ||   || | || |   ||||  |   |    ||  | ||   || |  | |  | || |  ||  ||  || | |  | ||  ||||  | || |   |||
CCCGAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGgtaaaattggactgtcatttctaagtttttgcttcttgtggttgattaaatgtagacaactcctctaatggtttacattttctgtgtg-tgtgtgtgtgtgtaatcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 3

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||||| ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || ||||||||||| || ||||||||||||     ||  | |||    |||  | |    ||  |    ||||  | |      || |     ||        | | | |     |       ||||||
TCCCAGC-AGCATGAAGATCAAGGTGGTGGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATATTAGCATCTCTCAGCACATTCCAACAGgtaaaaaatt-gttttatttgtgccca-tgatgtgggtggaatgatagtcaaggagtttgtgattgttagtctcagagtctcattccatttaaaaattgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 5

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||||| ||||||||||| || || ||||| ||||||||||| ||||| ||||| || ||| | ||||| ||||| |||||||| |||||  || |  | | ||    ||| ||   |  |   ||  | ||||| || |||| | |  |   |    |  ||| |||||  |     |           
TCCCAGC-AGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGgtgattttcattttttgtttttggtt---tttacaaatggtttgattcttttattgcatgatacta----acatgctttttgttggtacag-----------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 4

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatat-tacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| ||||||||||| || || ||||||||||| || |||||||| ||||| || || || ||||| ||||| || ||||| ||||||| |   |||||  || | |        ||  |     | |||   |   | ||| |     ||    ||| |  |  ||| | |  |        | || 
CCCAAGCAGCATGAAGATCAAGGTGGTGGCTCCTCCTGAGAGGAAGTATAGCGTATGGATTGGAGGCTCCATCTTAGCATCACTCAGCACTTTCCAGCAGgtatgttccttatacatataatgatgattatgattatgatacctgccctgcgttttaatggcaggc-ccatatttataccttgtcatactcaa-caaataca-

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtat----ttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag-------------------------------------------------
 |||   |||||||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| || ||| |||| || ||||| || ||||| ||||||      | | || | || || |     |        ||||| |  |||   ||  |  |   | | | |     ||   |  || |||| |  | |     |                                                  
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaa-gcacataacc--attcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 5'ss of exon 3

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatatta-cttttttgcattttatctgcattttgacgtgttggggtttttgcag
 |||   ||||||||||| ||||| ||||| || || |||||||| |||||||| ||||| ||||| || || |||||||| ||||| || ||||| ||||| || ||| | |  | ||     |||  |   || || ||   |    |  || | ||||  |   || |   || | |   |  | ||| |     |||||
CCCAAGCAGCATGAAGATCAAGGTAGTGGCACCACCTGAGAGGAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCATCCCTCAGCACTTTCCAGCAGgt-ttgcttcttttctgcaaagattta--tatgtgaatgattctaaccgtgaatcatctttgatagtttctgattggagtgc-attttttgag-----tgcag

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 3

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattac-ttttttgcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||||| |||||||| || || || |||||||||||||| || ||||| ||||| |||||  |||| || ||||| |||||||||||||||   |    | ||| |  |||||   ||   |    |  ||  ||||| | || | ||| | |||                                    
TCCCAGC-AGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATTGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccac---aacatt-cttttgctcgtttttcttatcagccttgtttttctttttcgtttctcgcag-----------------------------------

upper sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 3

-ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattactttttt-gcattttatctgcattttgacgtgttggggtttttgcag
  ||| | ||||||||||| |||||||| || || || |||||||||||||| || ||||| ||||| |||||  |||| || ||||| |||||||||||||||   |    | ||| |  |||||   ||   |    |  ||  ||||| | || ||||||| |||                                    
TCCCAGC-AGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATCGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccac---aacatt-cttttgctcgtttttcttatcagccttgtttttctttttcttttttcgcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|37849318|gb|BJ607326.1|BJ607326

EST:     GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAG                         ATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT
genomic: GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT

EST: gi|37852898|gb|BJ610906.1|BJ610906

EST:     GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAG                         ATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT
genomic: GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT

EST: gi|67698456|gb|BJ958689.1|BJ958689

EST:     GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAG                         ATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT
genomic: GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT

EST: gi|67727843|gb|BJ978102.1|BJ978102

EST:     GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAG                         ATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTNCAT
genomic: GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT

EST: gi|162177739|gb|FC354573.1|FC354573

EST:     GTGTATGGATCGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAG                         ATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT
genomic: GTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 29 (upstream exon), 34 (downstream exon)
Score: 6

ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttt ... gtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCATCGGAAATGCTTTTAGACGCGTGGTGATGGAGTCTTTTTTTATCACCGTG