1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcatactacaggcgtccgagaagttctttgttttggatccaactgcgacatctttaatgagccgaatagtactgtggagaagaatctcatacaag...
species | Physcomitrella patens |
transcript | PP1S332_23V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|100360347|gb|BY966126.1|BY966126
genomic: -AAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|162219572|gb|FC395568.1|FC395568
genomic: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|162219571|gb|FC395567.1|FC395567
genomic: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: AAAAGACGAGATGTACAAGCAAGAAGTCTGT-GGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATT-GEST: gi|162214827|gb|FC390962.1|FC390962
genomic: -AAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|37853342|gb|BJ611350.1|BJ611350
genomic: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|208381568|gb|DC923154.1|DC923154
genomic: GTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGANTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGGEST: gi|18359944|gb|BJ192005.1|BJ192005
genomic: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
EST: GAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG TTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
genomic: -AAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcata ... actgccgcagTTTTGGATTGAACAATAGTCCAACGGCAGTAATCGACACCACAGAGATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGGgtaagtcatactacaggcgtccgagaagttctttgttttggatccaactgcgacatctttaatgagccgaatagtactgtggagaagaatctcatacaag
- - - - - - - GAGATG
- - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA