1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGGGTTACAAGAACCCTCTTCTGTTGTTGCACCCATTGGGTGGTTTCACCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacctttaccagctctcctggccaattaactttttcgcagtctgagtagatcatattatgcgtctgatcggtaccgagtttgtgagttttaaatcataatacccccacgacaatgttgagcaagagaaaagaatatcgttttgacgttgcaacaattttgtag
species | Physcomitrella patens |
transcript | PP1S331_37V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTCEST: gi|162204149|gb|FC378907.1|FC378907
genomic: ATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
EST: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTCEST: gi|37853261|gb|BJ611269.1|BJ611269
genomic: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
EST: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTCEST: gi|37848002|gb|BJ606010.1|BJ606010
genomic: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
EST: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTCEST: gi|7207590|gb|AW561637.1|AW561637
genomic: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
EST: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTCEST: gi|162212721|gb|FC388833.1|FC388833
genomic: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
EST: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAG GTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
genomic: CCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacc ... aattttgtagGTCCTTGAAGCCGGAGTCCTTGACCCTGCGACCACCGTTGTGGCCATTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGGTTACAAGAACCCTCTTCTGTTGTTGCACCCATTGGGTGGTTTCACCAAGGCAGACGACGTTCCTCTAGAATGGAGAATGAAACAGCACGACCAGgtatcgtacctttaccagctctcctggccaattaactttttcgcagtctgagtagatcatattatgcgtctgatcggtaccgagtttgtgagttttaaatcataatacccccacgacaatgttgagcaagagaaaagaatatcgttttgacgttgcaacaattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA