1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATATTGGAGGAGTCAGTGGCCTTCTGCATATCAGCCAAATTAGTCACGATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtcttaccagtctttgtagaagtgaatggtgtttagtccgtgcacatggatcttcacgaactatcacgcatgttgacataagttgattgtcttctttccttcgtttataagacttgatgacttcatatgtgagtggtaaggatgtgtcttaccattaacatgtcttgttgtgattgcgcag
species | Physcomitrella patens |
transcript | PP1S32_313V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|67693131|gb|BJ953364.1|BJ953364
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162169716|gb|FC345253.1|FC345253
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162169717|gb|FC345254.1|FC345254
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162172209|gb|FC348774.1|FC348774
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: GATAAA-TGNAAG GTCATGATTNTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACEST: gi|208396322|gb|DC920030.1|DC920030
genomic: GATAAATTG-AAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCAC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162249173|gb|FC420398.1|FC420398
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162252958|gb|FC429019.1|FC429019
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|208365127|gb|DC947335.1|DC947335
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162158826|gb|FC335349.1|FC335349
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162211540|gb|FC387620.1|FC387620
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162196282|gb|FC375391.1|FC375391
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|208396404|gb|DC920070.1|DC920070
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162223594|gb|FC399718.1|FC399718
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162188261|gb|FC364755.1|FC364755
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162188260|gb|FC364754.1|FC364754
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: TCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAA-TGNAAG GTCATGATTNTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACEST: gi|162196281|gb|FC375390.1|FC375390
genomic: TCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTG-AAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCAC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162187440|gb|FC362662.1|FC362662
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|208387159|gb|DC945458.1|DC945458
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162263938|gb|FC439207.1|FC439207
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162223593|gb|FC399717.1|FC399717
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|208365201|gb|DC931167.1|DC931167
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTNGAGTCAGGATAAGGACAGAGGCCGTATEST: gi|18341631|gb|BJ173666.1|BJ173666
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTAT
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|208392949|gb|DC928635.1|DC928635
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162249172|gb|FC420397.1|FC420397
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: GGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|67725166|gb|BJ975425.1|BJ975425
genomic: GGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGCATTAGTTTGTCCACCEST: gi|208389104|gb|DC945680.1|DC945680
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162187439|gb|FC362661.1|FC362661
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162244466|gb|FC422639.1|FC422639
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACCEST: gi|162222297|gb|FC397109.1|FC397109
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
EST: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAG GTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
genomic: ATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtc ... gattgcgcagGTCATGATTTTGAGTCAGGATAAGGACAGAGGCCGTATTAGTTTGTCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATATTGGAGGAGTCAGTGGCCTTCTGCATATCAGCCAAATTAGTCACGATCGCCTCACAACCGTTGAGACTGTACTCTCACCTGGAGATAAATTGAAGgtacttagtcttaccagtctttgtagaagtgaatggtgtttagtccgtgcacatggatcttcacgaactatcacgcatgttgacataagttgattgtcttctttccttcgtttataagacttgatgacttcatatgtgagtggtaaggatgtgtcttaccattaacatgtcttgttgtgattgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG