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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacaggactcctcgtgtttttctactgtgcaaattttctcattctagttttactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S323_18V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g58740.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacaggactcctcgtgtttttctactgtgcaaattttctcattctagttttactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag
|| ||| || | ||||| ||||||||||| ||||| |||  |||  | || |||||||| |||||||||||| | || |||||||| ||||||||||| ||| |  | |||      ||| |  | | ||| | || |     || | | ||    ||    |  ||    | |  | ||     ||   || |  |  || | |                                                                                           
AAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGgtaattt-ctatttcctctcttgat-tgtttttgctatc----ttctgtaatcacggtagagcatatactgttgtgatatttagcatggggtatgttggaatgcac------------------------------------------------------------------------------------------

upper sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacaggactcctcgtgtttttctactgtgcaaattttctcattctagttttactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag
||||||||| | || |||||||| ||||| ||||| ||   |||  || | ||||||||||| ||||| ||| | |||||||| |||||||| ||||||||| ||    |   |  |  | |  ||||| | | |     |||| ||  |  |||  || ||    |  |     ||| ||    ||     |      ||  || |||  |||                                                                                  
AAGTTTCTGAGACAACCACATTTCATTGTCTGGGATAACAGTGATCTTGTTACACATGAGGTGATGGGTGGTTTGAAGAATGTCTACGCCATCGGTGCTGgtaagaatattttaa-atacgttctgtttgttttcca---aaatattaactatct--ttataacagtaaa---aataattaactaatcctact------aacaaacgaatggagt---------------------------------------------------------------------------------

upper sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacagg---actcctcgtgtttttctactgtgcaaattttctcattctagttt-tactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag
|||||||| || || |||||||||||||| ||||||||   |||| || |||| |||||||||||||| ||  | || ||||| || || |||||||| ||| || | ||||   |   |   | |  | ||| |  ||  |  || |  ||  ||||| | | || ||    |     || ||   | | |   |   ||                                                                                                   
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaag--aagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt--------------------------------------------------------------------------------------------------

upper sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA10G15900.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacagg---actcctcgtgtttttctactg-tgcaaattttctcattctagttttactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag
|||||||| || || |||||||||||||| ||||||||   |||| || |||| |||||| ||||||| || || || ||||| || || |||||||| ||| |||| | ||   |   ||  |    ||||| |  ||  ||  ||  || |  |  |   | || ||          || ||     | |   | | |                                                                                                    
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGATCATGGGTGGCCTGAAAAATGTCTATGCAATTGGTGCCGgtaagcttcaaattagttaacagcataagttttacagctaatgtgaaacttgtagtaat--ctgtattgccatgtcttttatatgttgtaatggttgtgact--------------------------------------------------------------------------------------------------

upper sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT2G41540.2 (Arabidopsis thaliana), 5'ss of exon 3
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacaggactcctcgtgttt---ttctactgtgcaaattttctcattctagttttact-gatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag
|||||  |  | || || ||||| ||||| |||||||||  |||  || | |||||||| || ||||||||||| |||||||| ||||||||||| |||||| || | ||   | |    | ||  |||   |  || |   ||| ||||| || | |  |  | || | ||   ||                                                                                                                           
AAGTTCTTAAGACAACCTCATTTCATTGTTTGGGACAATAGTGATCTTGTGACACATGAAGTAATGGGAGGTCTCAAGAATGTCTACGCCATTGGAGCTGgtaagtttctg-tatgtagacacggatttgagtgataattatcaagttttcacactttgatccttcttgttgtgttcag-------------------------------------------------------------------------------------------------------------------------