Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACGGGAGGCGCAACGGCGAGCGTAGGCGAAAGTCCGTTAGAGGGTGCATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcgttattattatttgtttactgtttcgatactacgttttgccgaactaaaattgcgaggtgtgattagggctttgatatttcattcgttata...

Basic information

species Physcomitrella patens
transcript PP1S31_322V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251234|gb|FC428513.1|FC428513
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18373166|gb|BJ204768.1|BJ204768
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|22491706|gb|BU051629.1|BU051629
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162202121|gb|FC377522.1|FC377522
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208368867|gb|DC947425.1|DC947425
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162275507|gb|FC451275.1|FC451275
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162268717|gb|FC445214.1|FC445214
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18350908|gb|BJ182959.1|BJ182959
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGC
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGC
EST: gi|18334943|gb|BJ166961.1|BJ166961
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18359549|gb|BJ191610.1|BJ191610
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208352202|gb|DC906305.1|DC906305
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162247833|gb|FC423413.1|FC423413
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37826978|gb|BJ584990.1|BJ584990
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18350278|gb|BJ182329.1|BJ182329
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67694383|gb|BJ954616.1|BJ954616
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162247834|gb|FC423414.1|FC423414
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18354830|gb|BJ186889.1|BJ186889
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162237536|gb|FC413008.1|FC413008
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162220963|gb|FC396148.1|FC396148
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37852953|gb|BJ610961.1|BJ610961
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208394902|gb|DC920189.1|DC920189
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208351203|gb|DC922038.1|DC922038
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGGAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67719729|gb|BJ969988.1|BJ969988
EST:     CATTGTGAGTCCCGACCTCCCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18326974|gb|BJ158975.1|BJ158975
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162237537|gb|FC413009.1|FC413009
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208344627|gb|DC912573.1|DC912573
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18362285|gb|BJ194355.1|BJ194355
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37830245|gb|BJ588257.1|BJ588257
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162231478|gb|FC407928.1|FC407928
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208389256|gb|DC933284.1|DC933284
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162231479|gb|FC407929.1|FC407929
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162275508|gb|FC451276.1|FC451276
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208348680|gb|DC926355.1|DC926355
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162251233|gb|FC428512.1|FC428512
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67727995|gb|BJ978254.1|BJ978254
EST:     CATTGTGAGTCCCGACCTCCCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|22132976|gb|BQ827466.1|BQ827466
EST:     GAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: GAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162269830|gb|FC445373.1|FC445373
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208397139|gb|DC908153.1|DC908153
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGGAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67728115|gb|BJ978374.1|BJ978374
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208367071|gb|DC935913.1|DC935913
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18372723|gb|BJ204325.1|BJ204325
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162222642|gb|FC397454.1|FC397454
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67701563|gb|BJ961796.1|BJ961796
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18325052|gb|BJ157048.1|BJ157048
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18350569|gb|BJ182620.1|BJ182620
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|208393560|gb|DC949722.1|DC949722
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162262634|gb|FC438962.1|FC438962
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162229718|gb|FC405146.1|FC405146
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162279395|gb|FC455511.1|FC455511
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162229719|gb|FC405147.1|FC405147
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162276604|gb|FC452182.1|FC452182
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162280474|gb|FC456387.1|FC456387
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTG
EST: gi|18332665|gb|BJ164678.1|BJ164678
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37829892|gb|BJ587904.1|BJ587904
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162279396|gb|FC455512.1|FC455512
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162276605|gb|FC452183.1|FC452183
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18369604|gb|BJ201692.1|BJ201692
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162222641|gb|FC397453.1|FC397453
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37829252|gb|BJ587264.1|BJ587264
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|7207393|gb|AW561395.1|AW561395
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACATCGTTATCGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGCAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37839591|gb|BJ597599.1|BJ597599
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67578654|gb|BJ950821.1|BJ950821
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162202122|gb|FC377523.1|FC377523
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37852243|gb|BJ610251.1|BJ610251
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162269829|gb|FC445372.1|FC445372
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|18329230|gb|BJ161236.1|BJ161236
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37843687|gb|BJ601695.1|BJ601695
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162262633|gb|FC438961.1|FC438961
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162220964|gb|FC396149.1|FC396149
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|67719854|gb|BJ970113.1|BJ970113
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37850917|gb|BJ608925.1|BJ608925
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|37831440|gb|BJ589452.1|BJ589452
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
EST: gi|162268716|gb|FC445213.1|FC445213
EST:     CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAG                         GTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG
genomic: CATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 39

GGATACGGGAGGCGCAACGGCGAGCGTAGGCGAAAGTCCGTTAGAGGGTGCATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcg ... atgaccacagGTGATAATGACCTTCCTGGGCTTACCGACATTGAGAAGCCAAGAATGAGGGGTCCCAAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATACGGGAGGCGCAACGGCGAGCGTAGGCGAAAGTCCGTTAGAGGGTGCATTGTGAGTCCCGACCTCTCAGTGCTGAACCTCGTTATTGTCAAGCAAGgtactcttcgttattattatttgtttactgtttcgatactacgttttgccgaactaaaattgcgaggtgtgattagggctttgatatttcattcgttata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG