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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCGATTGGGCACGATTCACGGGATGGGAAGAGCTCTGGATCATACTGCATGCAGCCGACGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAGgtagggcagggcgcgggttttgtgggaaggggagggtgggtttgaggagtttgtgggagctgagacgccggtgattgtgtattttatttatttatttatt...

Basic information

species Physcomitrella patens
transcript PP1S316_69V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162229193|gb|FC404552.1|FC404552
EST:     GCATGCAGCCGGCGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAG                         GCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG
genomic: GCATGCAGCCGACGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAGgtagggcagg ... gtgagtgcagGCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG
EST: gi|162279607|gb|FC455359.1|FC455359
EST:     GCATGCAGCCGACGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAG                         GCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG
genomic: GCATGCAGCCGACGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAGgtagggcagg ... gtgagtgcagGCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG
EST: gi|162202777|gb|FC379551.1|FC379551
EST:     GCATGCAGCCGGCGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAG                         GCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG
genomic: GCATGCAGCCGACGGCGTGTGCCGAGCCATCATGCACGGGTGGCTTCGAGgtagggcagg ... gtgagtgcagGCTTGCGCCCACCCTGGAGGAATGTCGTGCGTGACCCCGTCGTGTTTTGTG