1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTGGTGTGGGAGTTGCGACCGTCACAGACTTGCAGCTTAATTTCCTTGGTTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttcaccgcatgactgtcgatgtgtattttcgcgaaagccgagtatgttagctgattgaaaaatgaatgtgatgaaccaaattacaggatgtgc...
species | Physcomitrella patens |
transcript | PP1S311_78V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GNTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATT ATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTAEST: gi|208364189|gb|DC950425.1|DC950425
genomic: GTTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttc ... gggatgttagATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTA
EST: TTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATT ATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTAEST: gi|208373626|gb|DC952451.1|DC952451
genomic: TTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttc ... gggatgttagATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTA
EST: GGCTATTGTGACTACATGTGTAGCACAGATT ATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTAEST: gi|37845882|gb|BJ603890.1|BJ603890
genomic: GGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttc ... gggatgttagATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTA
EST: TGACTACATGTGTAGCACAGATT ATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTAEST: gi|208363875|gb|DC943332.1|DC943332
genomic: TGACTACATGTGTAGCACAGATTgtatcctttc ... gggatgttagATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTA
EST: GTTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATT ATGACCAACACCATCCAGAAA-GGTTCAAAGTTTCATCTACACAGCTTCTA
genomic: GTTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttc ... gggatgttagATGACCAACACCATCCAGAAAAGGTTCAAAGTTTCATCTACACAGCTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGGTGTGGGAGTTGCGACCGTCACAGACTTGCAGCTTAATTTCCTTGGTTCCGTAATCTCTTGCTTGGCTATTGTGACTACATGTGTAGCACAGATTgtatcctttcaccgcatgactgtcgatgtgtattttcgcgaaagccgagtatgttagctgattgaaaaatgaatgtgatgaaccaaattacaggatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatgaa