1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAATGGCGAAGGAAAGCGTGAGCAGCGAATATACCTTTGGTTTGACCCAACGGCAGAGTTCCATTCCTACTCCGTTTTGTGGAATAAACAACAGATCATgtgcgctctcaccatgtcctcgtttctctcctttgtatcttaaatttagacattttgatgatgtcacattatgcagtgcctaggatgtggacatgattggggctgttgggtagcaaggttgctgttgctaacctttctcttccttcggcag
species | Physcomitrella patens |
transcript | PP1S309_38V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGCAGAGTTCCATTCCTACTCCGTTTTGTGGAATAAACAACAGATCAT ATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACATEST: gi|208347946|gb|DC917625.1|DC917625
genomic: ACGGCAGAGTTCCATTCCTACTCCGTTTTGTGGAATAAACAACAGATCATgtgcgctctc ... ccttcggcagATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACAT
EST: AACAACAGATCAT A-TTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACATEST: gi|208385498|gb|DC953103.1|DC953103
genomic: AACAACAGATCATgtgcgctctc ... ccttcggcagATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACAT
EST: ACNGCAGAGTTCCA-TCCTACTCCG-TTTGNGGAATAAACAACAGATCAT ATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACATEST: gi|208366551|gb|DC954859.1|DC954859
genomic: ACGGCAGAGTTCCATTCCTACTCCGTTTTGTGGAATAAACAACAGATCATgtgcgctctc ... ccttcggcagATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACAT
EST: AACAACAGATCAT ATTTTATGTGGACANCACGCCTATCCGTGTTTACAAGAATAATAAGGACATEST: gi|208364136|gb|DC947268.1|DC947268
genomic: AACAACAGATCATgtgcgctctc ... ccttcggcagATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACAT
EST: GGAATAANCAACAGATCAT A-TTTATG-GGACAACACGCCTATCCGTG-TTACCAGAATAATAAGGACA-
genomic: GGAATAAACAACAGATCATgtgcgctctc ... ccttcggcagATTTTATGTGGACAACACGCCTATCCGTGTTTACAAGAATAATAAGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAATGGCGAAGGAAAGCGTGAGCAGCGAATATACCTTTGGTTTGACCCAACGGCAGAGTTCCATTCCTACTCCGTTTTGTGGAATAAACAACAGATCATgtgcgctctcaccatgtcctcgtttctctcctttgtatcttaaatttagacattttgatgatgtcacattatgcagtgcctaggatgtggacatgattggggctgttgggtagcaaggttgctgttgctaacctttctcttccttcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA