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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGAAGGAAGGAGGCCAAGAGCTTCTAGGAGGTCTTGATTGCACTGTTCACCGCAACTTTTTTGGTAGCCAGgtgctcgtgtaatcagcgacgctgatttataccctcgacccttgcaccggaaatttcgtcttatctttgttgaggacagattgcatgaaatgctctattcaatcagcgtacccttcttgtataaccagatcggtgtgaaattgtgtatgttcatgcag

Basic information

species Physcomitrella patens
transcript PP1S303_78V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S303_78V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os02g03740.1 (Oryza sativa), 5'ss of exon 4
GTGTGAAGGAAGGAGGCCAAGAGCTTCTAGGAGGTCTTGATTGCACTGTTCACCGCAACTTTTTTGGTAGCCAGgtgctcgtgtaatcagcga-cgctgatttataccctcgacccttgcaccggaaatttcgtcttatctttgttgaggacagattgcatgaaatgctctattcaatcagcgtacccttcttgtataaccagatcggtgtgaaattgtgtatgttcatgcag
|    ||    ||||| || |||||| | ||||| || ||||| ||||| ||||| ||||||||||| ||||||||     ||      | |  | ||| || ||  ||    |  ||    |    ||||| | || ||| |           |||  ||   ||  |  |    || |    || || |||| |                                     
GCCAAAAATCCGGAGGTCAGGAGCTTATTGGAGGACTAGATTGTACTGTCCACCGGAACTTTTTTGGGAGCCAGgtaactttgaggatcgtgttctctgtttgatggccggagcagttttcactatcatttc-tattgtctcttc--------aattttattttatttttga---gatgaatacactct-cttgcag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18333052|gb|BJ165066.1|BJ165066
EST:     TTCTAGGAGGTCTTGATTGCACTGTTCACCGCAACTTTTTTGGTAGCCAG                         ATAAACAGCTTTGAGATGGAGCTCTCAGTTCCATCTTTGGCCTCAGATGGA
genomic: TTCTAGGAGGTCTTGATTGCACTGTTCACCGCAACTTTTTTGGTAGCCAGgtgctcgtgt ... gttcatgcagATAAACAGCTTTGAGATGGAGCTCTCAGTTCCATCTTTGGCCTCAGATGGA