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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCTTGTCATTTCCAGAGGTGATTGCGAAGCTACCTCAGATCGGTGTACGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctcatgttcaatttatcgccgatcaccttggtttctatccgctttacgcttctattggacttggaaaacattgaatcttaaatgattgaagtatatttcgtagactgaatcgagaacctaatgaatcttttgggatctgccag

Basic information

species Physcomitrella patens
transcript PP1S2_777V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162280126|gb|FC456520.1|FC456520
EST:     CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG                         CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: gi|162162891|gb|FC339258.1|FC339258
EST:     CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG                         CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: gi|100448647|gb|CJ972946.1|CJ972946
EST:     CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG                         CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: gi|162151261|gb|FC327715.1|FC327715
EST:     CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG                         CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA