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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTGACTGGAGCTTCAAAGTTGCTTGCAAACACCCTCTACTCATACAGAGGAATGGGTCTGTTCATGGGCACTATGATTGCTGGCTGGGACGAAACGgtacaagttcttaggacttctaagtgatgctcctgatgtgaggtcttatttgttgataacattggaaaccatcaaggatgacttcacgactttggacagc...

Basic information

species Physcomitrella patens
transcript PP1S2_300V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_300V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ25863 (Selaginella moellendorffii), 5'ss of exon 4
TTCAGTGACTGGAGCTTCAAAGTTGCTTGCAAACACCCTCTACTCATACAGAGGAATGGGTCTGTTCATGGGCACTATGATTGCTGGCTGGGACGAAACGgtacaagttcttaggacttctaagtg--atgctcctgatgtgaggtcttatttgttgataacattggaaaccatcaaggatgacttcacgactttggacagc
||| ||  | || ||||| ||| |  | ||||||||||||||||| ||| | || |||||||||| |||||| || ||||| |||||||||||||||||||||   | | |||    ||||   |   ||    |   |   | || || ||      |  | |  ||    ||| ||                        
TTCTGTTGCCGGTGCTTCCAAGCTCTTGGCAAACACCCTCTACTCCTACCGTGGCATGGGTCTGTCCATGGGAACCATGATCGCTGGCTGGGACGAAACGgtatgggctgttatcttttcttgtttccatctcgccattcccaagttttcttctcacgtctcgt--gatttgatccag------------------------

upper sequence: PP1S2_300V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ04804 (Selaginella moellendorffii), 5'ss of exon 4
TTCAGTGACTGGAGCTTCAAAGTTGCTTGCAAACACCCTCTACTCATACAGAGGAATGGGTCTGTTCATGGGCACTATGATTGCTGGCTGGGACGAAACGgtacaagttcttaggacttctaagtg--atgctcctgatgtgaggtcttatttgttgataacattggaaaccatcaaggatgacttcacgactttggacagc
||| ||  | || ||||| ||| |  | ||||||||||||||||| ||| | || |||||||||| |||||| || ||||| |||||||||||||||||||||        |     ||||   |   ||    |   |   | || || ||      |  | |  ||    ||| ||                        
TTCTGTTGCCGGTGCTTCCAAGCTCTTGGCAAACACCCTCTACTCCTACCGTGGCATGGGTCTGTCCATGGGAACCATGATCGCTGGCTGGGACGAAACGgtatttccctgttctctttcttgtttccatctcgccattcccaagttttcttctcacgtctcgt--gatttgatccag------------------------