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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAGTGTCCAAGTGCCCAGTGAGTTCAGCCTCTCTCAAATGTGGCTTCTCGCTGGCTCCTTCACCGGGGACCTCAATAGCATTGAGGCTGGCTGGCAAgtaagcccttctcttcactaagcaaacgatgcttattaggtcctcgcactcttgttctttcaagtttacaggatattgttcactgtggactaaagccagatgatacattcctgtag

Basic information

species Physcomitrella patens
transcript PP1S293_13V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S293_13V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ24932 (Selaginella moellendorffii), 5'ss of exon 4
TCCCAGTGTCCAAGTGCCCAGTGAGTTCAGCCTCTCTCAAATGTGGCTTCTCGCTGGCTCCTTCACCGGGGACCTCAATAGCATTGAGGCTGGCTGGCAAgtaag--cccttctcttcactaagcaaacgatgcttattaggtcctcgcactcttgttctttcaagtttacaggatattgttcactgtggactaaagccagatgatacattcctgtag
 ||     ||||||| || |  |||||||||||||| ||||||||| | || ||||| ||||||   || || ||||||||||| || || ||||||||||||||  |||||      |||   |       | ||| |     || || |   ||| ||||||                                                      
ACCAGCCATCCAAGTCCCGAACGAGTTCAGCCTCTCCCAAATGTGGTTGCTTGCTGGTTCCTTCTATGGCGATCTCAATAGCATCGAAGCCGGCTGGCAAgtaaggaccctttctcggacttctctcggagagtttactga---ctggctcgagtgt-ctttcag-----------------------------------------------------

upper sequence: PP1S293_13V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ30203 (Selaginella moellendorffii), 5'ss of exon 4
TCCCAGTGTCCAAGTGCCCAGTGAGTTCAGCCTCTCTCAAATGTGGCTTCTCGCTGGCTCCTTCACCGGGGACCTCAATAGCATTGAGGCTGGCTGGCAAgtaag--cccttctcttcactaagcaaacgatgcttattaggtcctcgcactcttgttctttcaagtttacaggatattgttcactgtggactaaagccagatgatacattcctgtag
 ||     ||||||| || |  |||||||||||||| ||||||||| | || ||||| ||||||   || || ||||| ||||| || || ||||||||||||||  |||||      |||   |       | ||| |     || || |   ||| ||||||                                                      
ACCAGCCATCCAAGTCCCGAACGAGTTCAGCCTCTCCCAAATGTGGTTGCTTGCTGGTTCCTTCTATGGCGATCTCAACAGCATCGAAGCCGGCTGGCAAgtaaggaccctttctcggacttcacttcgagagtttactga---ctggctcgagtgt-ctttcag-----------------------------------------------------