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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCTCTGAAGCAAGAGTGCGGAGTTGGACTTTTCAAATTTTGCAAGCTTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtcttgttttgaatgatttcctggacattaacaatgttcattatttcttttctttttaatatatgattacatggatagtataatcgtgaatgcaaagtctgacgtactgaaccttaataacttttgctaacgggattgctccctatttgtcttgtgaag

Basic information

species Physcomitrella patens
transcript PP1S28_184V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172239|gb|FC348804.1|FC348804
EST:     TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
EST: gi|100452665|gb|CJ975383.1|CJ975383
EST:     TATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
EST: gi|162171440|gb|FC346715.1|FC346715
EST:     TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
EST: gi|162169093|gb|FC345983.1|FC345983
EST:     TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
EST: gi|100434800|gb|BY960838.1|BY960838
EST:     TAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
EST: gi|162256739|gb|FC432633.1|FC432633
EST:     TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAG                         AGAATTTACTGGGTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG
genomic: TTTAGAGTATATGCACAACAATGGTTATTTTCACAGGGATCTGAAACCAGgtacagtctt ... tcttgtgaagAGAATTTACTGGTTACCCAGGACGTGGTCAAGGTTGCTGATTTTGGGCTTG