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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAGAATCGACTCTGATGAGGAGCTCCTGGATAATCAGGACCGCATAATTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctaccacatgtgttccctgcgtttttctttggaacagggtttgcataggctccctataagtatccctatcctttaagcattttgcatgtctccagttgcttcaggggaagggcatgatgtgatactaaagcagatttacctcttcgtccag

Basic information

species Physcomitrella patens
transcript PP1S286_16V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571874|gb|BJ944698.1|BJ944698
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
EST: gi|162240034|gb|FC418811.1|FC418811
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
EST: gi|100438348|gb|BY979912.1|BY979912
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGGCCCGACGGAAGCGAGCATGG
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACAGAATCGACTCTGATGAGGAGCTCCTGGATAATCAGGACCGCATAATTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctaccacatgtgttccctgcgtttttctttggaacagggtttgcataggctccctataagtatccctatcctttaagcattttgcatgtctccagttgcttcaggggaagggcatgatgtgatactaaagcagatttacctcttcgtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT