1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGCTCATTTCAGATACTAAAACCAGCGGAAAAGAAGCAAAAGTTTGTCTCTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagattttgaagcacgagaaacttacttgatcgagtcactgattgtcgcgtgtatgtaaatgtactatgaatgcatggaattgtccattctatgacttccacgtaagatcctgaaatcggtgtttctggggagggccag
species | Physcomitrella patens |
transcript | PP1S283_48V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAG GGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAATEST: gi|37852534|gb|BJ610542.1|BJ610542
genomic: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagat ... ggagggccagGGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAAT
EST: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAG GGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAATEST: gi|37849108|gb|BJ607116.1|BJ607116
genomic: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagat ... ggagggccagGGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAAT
EST: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAG GGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAATEST: gi|37841068|gb|BJ599076.1|BJ599076
genomic: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagat ... ggagggccagGGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAAT
EST: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAG GGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAAT
genomic: CTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagat ... ggagggccagGGATAATGCCAGGTGATGGTCGTGAGCTAGAGAAACCAACCTATAAACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCATTTCAGATACTAAAACCAGCGGAAAAGAAGCAAAAGTTTGTCTCTTATGGCAACAATCCGTCACGACCTGGAACGCCTCCTCGTGCCGCCAAGgtcagcagattttgaagcacgagaaacttacttgatcgagtcactgattgtcgcgtgtatgtaaatgtactatgaatgcatggaattgtccattctatgacttccacgtaagatcctgaaatcggtgtttctggggagggccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC