Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccgcggcacgagatcctcttgcactgattctggaagccaactctttgtttcaaattataggcagttaacctttattacaggtctttgtcctccgcaatcaatgtcatcagtctatattggattttttcctaacatgcttcttcactggttaatttgattacag

Basic information

species Physcomitrella patens
transcript PP1S282_25V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206404|gb|FC383397.1|FC383397
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|37853532|gb|BJ611540.1|BJ611540
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|67710125|gb|BJ965862.1|BJ965862
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162179274|gb|FC356223.1|FC356223
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18367098|gb|BJ199178.1|BJ199178
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18360158|gb|BJ192220.1|BJ192220
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|208381818|gb|DC923384.1|DC923384
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162259821|gb|FC435956.1|FC435956
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162190842|gb|FC368040.1|FC368040
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|19784064|gb|BQ040113.1|BQ040113
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGCGCTGAAAAACCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162259820|gb|FC435955.1|FC435955
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18330776|gb|BJ162782.1|BJ162782
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|7148076|gb|AW509998.1|AW509998
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162170017|gb|FC345070.1|FC345070
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162258718|gb|FC434517.1|FC434517
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162190843|gb|FC368041.1|FC368041
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18368232|gb|BJ200317.1|BJ200317
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|208372562|gb|DC940809.1|DC940809
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162279161|gb|FC455500.1|FC455500
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|208354395|gb|DC953815.1|DC953815
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162258719|gb|FC434518.1|FC434518
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|19788794|gb|BQ040929.1|BQ040929
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TCCAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162280390|gb|FC456095.1|FC456095
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|37846839|gb|BJ604847.1|BJ604847
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|13315379|gb|BG409034.1|BG409034
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18371206|gb|BJ202808.1|BJ202808
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162263565|gb|FC438853.1|FC438853
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162280391|gb|FC456096.1|FC456096
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18325295|gb|BJ157291.1|BJ157291
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162179273|gb|FC356222.1|FC356222
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162170018|gb|FC345071.1|FC345071
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162206405|gb|FC383398.1|FC383398
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|67724126|gb|BJ974385.1|BJ974385
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162263566|gb|FC438854.1|FC438854
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18366461|gb|BJ198540.1|BJ198540
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGG-TGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCC
EST: gi|67572957|gb|BJ945781.1|BJ945781
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162200037|gb|FC376499.1|FC376499
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCG-CCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|67718208|gb|BJ968467.1|BJ968467
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18327820|gb|BJ159824.1|BJ159824
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|37851370|gb|BJ609378.1|BJ609378
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18333247|gb|BJ165261.1|BJ165261
EST:     GTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: GTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|37847531|gb|BJ605539.1|BJ605539
EST:     CACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: CACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|67696339|gb|BJ956572.1|BJ956572
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18325583|gb|BJ157580.1|BJ157580
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18338941|gb|BJ170967.1|BJ170967
EST:     CAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: CAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|162279160|gb|FC455499.1|FC455499
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
EST: gi|18366927|gb|BJ199007.1|BJ199007
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGG-TGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCC
EST: gi|208346219|gb|DC909525.1|DC909525
EST:     ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG                         TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC
genomic: ACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 22 (upstream exon), 35 (downstream exon)
Score: 14

ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccg ... ttgattacagTACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAGgttcgctccgcggcacgagatcctcttgcactgattctggaagccaactctttgtttcaaattataggcagttaacctttattacaggtctttgtcctccgcaatcaatgtcatcagtctatattggattttttcctaacatgcttcttcactggttaatttgattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC