Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGATGTCTCCGGAGATAAAACTCCTCTTCAGGAAGCATTTTCTCTAGCCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcccgatcggtagtcgtctcaaagagattgcaatccactgtttttgctaactggttaagcccaggcttgaaagcaattgcatactgaatgcat...

Basic information

species Physcomitrella patens
transcript PP1S275_2V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S275_2V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ13080 (Selaginella moellendorffii), 5'ss of exon 4
ACTCGATGTCTCCGGAGATAAAACTCCTCTTCAGGAAGCATTTTCTCTAGCCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcccga---tcggtagtcgtc-tcaaagagattgcaatccactgtttttgctaactggttaagcccaggcttgaaagcaattgcatactgaatgcat
 || ||  |      |||  | |||||| | |||||||| |||  ||| || |||||||||||||||||||| || || ||||| || ||||| ||||| |||||| |   |    |||||||   |  |     | | ||  |||  | |                                                     
GCTTGACTTGGTTCAAGAACACACTCCTTTGCAGGAAGCTTTTCTTCTCGCGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagtttattgtccttcggtagagattgttctgaaaaatgtcatctccag-----------------------------------------------------

upper sequence: PP1S275_2V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ14098 (Selaginella moellendorffii), 5'ss of exon 4
ACTCGATGTCTCCGGAGATAAAACTCCTCTTCAGGAAGCATTTTCTCTAGCCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcccgatcggtagtcgtctcaaagagattgcaatccactgtttttgctaactggttaagcccaggcttgaaagcaattgcatactgaatgcat
 || ||  |      |||  | |||||| | |||||||| |||  ||| || |||||||||||||||||||| || || ||||| || ||||| ||||| |||||| |         | ||| |     ||||||||   |  |   | |   ||  |  |                                       
GCTGGACTTGGTTCAAGAACACACTCCTTTGCAGGAAGCTTTTCTTCTCGCGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagttt--------atggtccttcggtagagattgttctgaaaaatgtcatct--ccag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67727512|gb|BJ977771.1|BJ977771
EST:     CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACA                         ACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
genomic: CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcc ... gcggatgcagACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
EST: gi|67693878|gb|BJ954111.1|BJ954111
EST:     CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACA                         ACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
genomic: CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcc ... gcggatgcagACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
EST: gi|162196653|gb|FC374943.1|FC374943
EST:     CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACA                         ACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
genomic: CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcc ... gcggatgcagACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
EST: gi|162165823|gb|FC340926.1|FC340926
EST:     CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACA                         ACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
genomic: CCGACGATGTTCTTAGGCAGGGAGTTCAAGGCATTTCAGACATCATCACAgtaagtgtcc ... gcggatgcagACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
EST: gi|37840343|gb|BJ598351.1|BJ598351
EST:     TTCAAGNCATTTCAGACATCATCACA                         ACGCCAGNTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT
genomic: TTCAAGGCATTTCAGACATCATCACAgtaagtgtcc ... gcggatgcagACGCCAGGTCTTGTGAATGTTGATTTTGCAGATGTTAGAGCTGTAATGAGT