1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTTGCCTTATGATTTGTTGATGCAACAATTGGATATTTCCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattctgctgacttttgaatgttgatatcattcttttttaaagcaacctcactttttaaataaccctttgcagttttattatgtcgagtttgttcgatgatcgagcgttcacaaccatttttgtatcttctactttggcaggacttatcaatacaacttcattgatcttactgcgcgctttgtgacag
species | Physcomitrella patens |
transcript | PP1S271_80V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAATGTTCGGGAGCNTGAAGACTTNCTTATCANCGANTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162245043|gb|FC421569.1|FC421569
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGAGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162183314|gb|FC359229.1|FC359229
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGAGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|208357665|gb|DC934117.1|DC934117
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|18330929|gb|BJ162935.1|BJ162935
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATEST: gi|18368238|gb|BJ200323.1|BJ200323
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGAT
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGAEST: gi|100452982|gb|CJ975541.1|CJ975541
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGA
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTTGAGEST: gi|162245042|gb|FC421568.1|FC421568
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTT-GAG
EST: CCAATGTTCGAGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162266011|gb|FC442696.1|FC442696
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|208352193|gb|DC901714.1|DC901714
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGTATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|208367659|gb|DC947365.1|DC947365
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCCTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162183315|gb|FC359230.1|FC359230
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGAGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|100439177|gb|BY980132.1|BY980132
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162266010|gb|FC442695.1|FC442695
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|162204856|gb|FC381187.1|FC381187
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGAGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAGEST: gi|22492731|gb|BU052654.1|BU052654
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
EST: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGEST: gi|18339530|gb|BJ171557.1|BJ171557
genomic: CCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTG
EST: AGCTTGAAGACTTACTTATCAACGACTGCATGTACTCT GGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
genomic: AGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattc ... tttgtgacagGGCATAGTTAGAGGGAAGCTGGATCAAAGACGTCGTTGTTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGCCTTATGATTTGTTGATGCAACAATTGGATATTTCCAATGTTCGGGAGCTTGAAGACTTACTTATCAACGACTGCATGTACTCTgtaggaattctgctgacttttgaatgttgatatcattcttttttaaagcaacctcactttttaaataaccctttgcagttttattatgtcgagtttgttcgatgatcgagcgttcacaaccatttttgtatcttctactttggcaggacttatcaatacaacttcattgatcttactgcgcgctttgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA