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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCAAACGAGTATCAGgttattaactccccgtctacattttctggttgcaatgttgatttgaatgaacaatttctctaagttatgacgcagactgctgaatgcgtttatatgccgtttttttttgggaaattggcgcag

Basic information

species Physcomitrella patens
transcript PP1S271_49V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386675|gb|DC929121.1|DC929121
EST:     ATTTAGGGGGTCAAACGAGTATCAG                         ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: gi|208374444|gb|DC940717.1|DC940717
EST:     ATTTAGGGGGTCAAACGAGTATCAG                         ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: gi|162240378|gb|FC419311.1|FC419311
EST:     ATTTAGGGGGTCAAACGAGTATCAG                         ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: gi|208392443|gb|DC907920.1|DC907920
EST:     ATTTAGGGGGTCAAACGAGTATCAG                         ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: gi|67569908|gb|BJ942732.1|BJ942732
EST:     ATTTAGGGGGTCAAACGAGTATCAG                         ACCGTACTGGCGATGCTATTATCCAAACAC
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACAC