Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaagttttttcttttctttttccccacaatgctatagaatattctatgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag

Basic information

species Physcomitrella patens
transcript PP1S269_44V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S269_44V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 3
GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaagttttttcttttctttttccccacaatgctatagaatattct--atgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag------
|| |||||  | ||  | || ||  | || ||||| |||||||| |||||||||||||| ||||||||| | ||||| |||||||||||||         |||||||| ||| | ||||  ||||    |      || ||   || | |   |||  |   |    ||          |||   ||| |  |  || |   | ||   | |||     || |  ||    |||  | ||  | | |   | | ||  ||  | ||   |      
GTTGAGCTGTGTACTATTGATGGTTTGGTTAAGGAAAGCACTCAGTGTGCCCCTAATGGATACTATTTTATCCCAGTCTATGACAAGgtatt--------gatcttgtgctt-agcatttattttgggttttggccttgataaatgctctgg-aaacttccgtaaaattaagaaagaaaacataactagatgaccttattactctgacaagattctcagcattatca----tatggaagataatattctgttctttttgttgttttcacgccacag

upper sequence: PP1S269_44V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaa-gttttttcttttctttttccccacaatgctatagaatattctatgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag
|| ||||| |  ||  | || ||||| || |||||||| || |||||||| || ||||| ||||||||| | ||||| ||||||||||||    || |  ||  |||| |  |||    || | |  ||  | | ||   ||    |    | | || |   | | | | | ||          |  |||  | | ||        || ||||| || || || |||                                          
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgca-catttaagtatat-ttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctca--atgcaattattttca-ttacag------------------------------------------

upper sequence: PP1S269_44V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaagttttttcttttctttttccccacaatgctatagaatattctatgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag
|| ||||| |  ||  | || ||||| || |||||||| || |||||||| || ||||| ||||||||| | ||||| ||||||||||||    || |  ||  |||| |    | |    | ||   | | | | |   | | |   | || ||  |  | |   |  |||       |  ||  |||  | | ||        || ||||| || || ||||||                                          
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctca--atgcaattattttca-ttccag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18373409|gb|BJ204987.1|BJ204987
EST:     GCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAG                         GGTACTCTGATAGTACAGATTCAGGGGCCAGAAGGGTGGTTTTTTGAACCT
genomic: GCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttg ... gatattgcagGGTACTCTGATAGTACAGATTCAGGGGCCAGAAGGGTGGTTTTTTGAACCT