1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTAGCGAAGGACCTGTAACTGGTCGTGCCGCGGATGTTCTGGCTGCTGCTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttctgtttgtctcacttcatattaaactcactggtttttgcttcattatggtttgttcaaatatttatgatagtaatgaaaaaatgattctctttcgcag
species | Physcomitrella patens |
transcript | PP1S264_34V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATANCAGNTGCAGAAGTTGCGNTTCGCNTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCNTACGATTGCEST: gi|100443485|gb|BY981912.1|BY981912
genomic: TCATA-CAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
EST: CTCATACAGCTGCGGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGGACCGATGCCATTCAGAAGGTAGEST: gi|162177050|gb|FC353103.1|FC353103
genomic: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTG-ACCGATGCAATTCAGAAGGTAG
EST: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGCEST: gi|67717654|gb|BJ967913.1|BJ967913
genomic: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
EST: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGCEST: gi|162255462|gb|FC431876.1|FC431876
genomic: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
EST: TCATACAGCTGCAGAAGTTGCG-TTCCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTAAGATTGCEST: gi|162236928|gb|FC412879.1|FC412879
genomic: TCATACAGCTGCAGAAGTTGCGCTT-CGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
EST: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGCEST: gi|19779242|gb|BQ039414.1|BQ039414
genomic: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
EST: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAG AACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
genomic: CTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttct ... tctttcgcagAACAAGGACGTGACCGATGCAATTCAGAAGGTAGCGGCTGCCTACGATTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTAGCGAAGGACCTGTAACTGGTCGTGCCGCGGATGTTCTGGCTGCTGCTCATACAGCTGCAGAAGTTGCGCTTCGCCTAGTCAGGCCTGGAAAGAAGgtatgcttctgtttgtctcacttcatattaaactcactggtttttgcttcattatggtttgttcaaatatttatgatagtaatgaaaaaatgattctctttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG