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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAGgtatgctagaccttcactattatcactatgttccatgtgggagtactgtggctgtgttgatggtattttgttgttctgcatttttagagccatattttga...

Basic information

species Physcomitrella patens
transcript PP1S25_89V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67697971|gb|BJ958204.1|BJ958204
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|162273472|gb|FC449617.1|FC449617
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|208354191|gb|DC957411.1|DC957411
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|208361426|gb|DC935113.1|DC935113
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|162273471|gb|FC449616.1|FC449616
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|37828975|gb|BJ586987.1|BJ586987
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG
EST: gi|208387454|gb|DC949239.1|DC949239
EST:     CACAAGTACAGAGAGACTGAG
genomic: CACAAGTACAGAGAGACTGAG