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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAACGATTGTACTTGGTTTTTGAATACCTGGACCTCGACCTAAAGAAGCATATGGACACCTGCCCGGACCTTGCCAAAGACCCACGCTTGATCAAGgtatgtctaatcttttctgcattagcgtgtatgtgttttaggctaaaagctcaaactatacgtcacattataattcggtattggaatactacctcaagatttatagcctctttgggttcatttgtgcctctggttaacagtgagtaaagctttgcgtgcag

Basic information

species Physcomitrella patens
transcript PP1S25_198V6.5
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S25_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EDP08130 (Chlamydomonas reinhardtii), 5'ss of exon 3
TGAGAAACGATTGTACTTGGTTTTTGAATACCTGGACCTCGACCTAAAGAAGCATATGGACACCTGCCCGGACCTTGCCAAAGACCCACGCTTGATCAAGgtatgtctaatcttttctgcattagcgtgtatgtgttttaggctaaaagc-tcaaactatacgtcaca--ttataattcggta---------ttggaatactacctcaagatttatagcctctttgggttcatttgtgcctctggttaacagtgagtaaagctttgcgtgcag------
 ||    |||||||||||||| || |||| ||||||||| ||||| || ||||| ||||||      ||| || |   |    | |  ||| | |||||||| || |||           |  |||| |     ||    |   ||  || ||     |  || | ||  |   |  | |||          | |||| | | |  || |   | | |||  |  |   || |   |   |||||   |  ||||  | | | ||||| ||        
CGACCGCCGATTGTACTTGGTGTTCGAATTCCTGGACCTGGACCTTAAAAAGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtg-ctagcggga---aaacaagcgggggcaggtggcggcaaaagggcgtcgggtgaagcgccgcaggtgggagctgggtgcgtgctgggtgggaagagtgcgacatggggtttcgccg-tcggtaatcttggataaatctgg---atcgtgaccagaaccttgcgcgctcgtgcag

upper sequence: PP1S25_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ37669 (Selaginella moellendorffii), 5'ss of exon 3
TGAGAAACGATTGTACTTGGTTTTTGAATACCTGGACCTCGACCTAAAGAAGCATATGGACACCTGCCCGGACCTTGCCAAAGACCCACGCTTGATCAAGgtatgtctaatcttttctgcattagc-gtgtatgtgttttaggctaaaagctcaaactatacgtcacattataattcggtattggaatactacctcaagatttatagcctctttgggttcatttgtgcctctggttaacagtgagtaaagctttgcgtgcag
 |||||     | ||| |||| ||||| ||||||||| | || ||||||||||||||||||| | |||| ||| | |||||    |||||  |||| || |||||   |  |         |   | |  |   ||| |   |||      |||  | | || |    || |  ||   | ||||  | ||  |||                                                                  
CGAGAAGAAGCTCTACCTGGTCTTTGAGTACCTGGACTTGGATCTAAAGAAGCATATGGACAACAGCCCAGACTTCGCCAAGAGTCCACGAATGATTAAAgtatggtgagcccccaaaatctctccagcattcttgtgtggtgcttgtccttcactc-acactt----tttttctttttttttggtttcctttctcgcag--------------------------------------------------------------