1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCTGTATTTGGAGGCGGTTGCCATAATACCACAGTTGGTTTTATTGCAAAGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtccttatctcaaaatgtgttgtcgtttgtttgctatagtagtgaggcatgagtgtaacagatagtgcaccataccacgataatgtatatgttctcaaagataggtctttctgtgtttcattgtggattccccttttcggcag
species | Physcomitrella patens |
transcript | PP1S258_82V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|67698901|gb|BJ959134.1|BJ959134
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|208385306|gb|DC915106.1|DC915106
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|208394693|gb|DC928853.1|DC928853
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|67575434|gb|BJ948258.1|BJ948258
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|208360478|gb|DC950052.1|DC950052
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGAEST: gi|162254204|gb|FC429923.1|FC429923
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
EST: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGG AGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
genomic: AGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtcctt ... ttttcggcagAGCTTATCGTGGATTCTACCTCATCAACTGGGTTTATCGGTACCTGACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGTATTTGGAGGCGGTTGCCATAATACCACAGTTGGTTTTATTGCAAAGGACAAGAAATGTAGACAATTTAACAGGCAACTATGTGTTTTTCCTTGGgtatgtccttatctcaaaatgtgttgtcgtttgtttgctatagtagtgaggcatgagtgtaacagatagtgcaccataccacgataatgtatatgttctcaaagataggtctttctgtgtttcattgtggattccccttttcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA