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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACTCCCTGCAAAGAACCTCATGGCCGAGCGCAGACGCCGCCAAAAACTCAACGATCGCCTGTACATGCTTCGTTCTGTGGTTCCCAAAATCACCAAGgttcaacgcaccttcactctcgatcttatctatatgctgtatgatggttgcacacattagaggttacgattttctataaggttccagtgacacattcaaagtgggtatggccaacag

Basic information

species Physcomitrella patens
transcript PP1S257_22V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S257_22V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os11g32100.1 (Oryza sativa), 5'ss of exon 1
GGGACTCCCTGCAAAGAACCTCATGGCCGAGCGCAGACGCCGCCAAAAACTCAACGATCGCCTGTACATGCTTCGTTCTGTGGTTCCCAAAATCACCAAGgttcaacgcaccttcactctcgatcttatctatatgctgtatgatggttgcacacattagaggttacgattttctataaggttccagtgacacattcaaagtgggtatggccaacag
|||  | || || |||||||||||||| |||||| | |||||  | || |||||||| ||||| |||||||| || || || || ||||| |||| |||||| ||     ||||| |   |  ||  |  | |       ||||   |  | ||    | | |||   | ||      |  ||   |  |  | |  ||  | |||           
GGGGATGCCGGCCAAGAACCTCATGGCGGAGCGCCGCCGCCGGAAGAAGCTCAACGACCGCCTCTACATGCTCCGCTCCGTCGTGCCCAAGATCAGCAAGgt-caggattccttctcctgctctcccaattct------catga-aatctctca----aaaagttcttaattctggcgaattttagggaatgcgt--aattttggtcgaatttt---

upper sequence: PP1S257_22V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ15029 (Selaginella moellendorffii), 5'ss of exon 1
GGGACTCCCTGCAAAGAACCTCATGGCCGAGCGCAGACGCCGCCAAAAACTCAACGATCGCCTGTACATGCTTCGTTCTGTGGTTCCCAAAATCACCAAGgttcaacgcaccttcactctcgatcttatctatatgctgtatgatggttgcacacattagaggttacgattttctataaggttccagtgacacattcaaagtgggtatggccaacag
     | || || |||||  |  |||| ||| |  | || ||  | || |||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||         ||      | |    | |||  |  | ||| ||| |||  ||||    | |  || |||  |     |                                    
----ATGCCGGCCAAGAATTTGCTGGCGGAGAGGCGGCGGCGGAAGAAGCTCAACGATCGCCTCTACATGCTTCGATCGGTGGTGCCCAAGATCACCAAGgttc-------tctcttgtctgctacggtttatgggaagaatg-tgggtgctaacatc---gatcgcgctttgattcgcag------------------------------------

upper sequence: PP1S257_22V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ37663 (Selaginella moellendorffii), 5'ss of exon 1
GGGACTCCCTGCAAAGAACCTCATGGCCGAGCGCAGACGCCGCCAAAAACTCAACGATCGCCTGTACATGCTTCGTTCTGTGGTTCCCAAAATCACCAAGgttcaacgcaccttcactctcgatcttatctatatgctgtatgatggttgcacacattagaggttacgattttctataaggttccagtgacacattcaaagtgggtatggccaacag
     | || || |||||  |  |||| ||| |  | || ||  | ||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||          ||      | |    | |||  |  | ||| ||| |||  ||||    | |  || |||  |     |                                    
----ATGCCGGCCAAGAATTTGCTGGCGGAGAGGCGGCGGCGGAAGAAACTCAACGATCGCCTCTACATGCTTCGATCGGTGGTGCCCAAGATCACCAAGgttt-------tctcttgtctgctacggtttatgggaagaatg-tgggtgctaacatc---gatcgcgctttgattcgcag------------------------------------