1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAAACCTATCAATGTTCGATTTATAGAATTCATGCCTTTTGATGGCAATGTCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcatttaatactttttcggcatttggctagtatttttggctcattctgaattaatttctacgaactatccagtgcaggtcagatgtactttcatta...
species | Physcomitrella patens |
transcript | PP1S23_46V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162161664|gb|FC339079.1|FC339079
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162263880|gb|FC438668.1|FC438668
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162205182|gb|FC381280.1|FC381280
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: GAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162196916|gb|FC373308.1|FC373308
genomic: GAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: TACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162193398|gb|FC368910.1|FC368910
genomic: TACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAEST: gi|162205183|gb|FC381281.1|FC381281
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAACCTATCAATGTTCGATTTATAGAATTCATGCCTTTTGATGGCAATGTCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcatttaatactttttcggcatttggctagtatttttggctcattctgaattaatttctacgaactatccagtgcaggtcagatgtactttcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA