1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAGCACAAAATCAAGAGTACGGAGAAAGGCATTGAGGATGTTGCTGAGAACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaactacatcgttttggataatagatttggaagttaacagcagtcagctcattggtgaaggttttagggctttgtctaattgaagcgttacct...
species | Physcomitrella patens |
transcript | PP1S237_60V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATG ACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATTEST: gi|162215024|gb|FC391312.1|FC391312
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATG ACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATTEST: gi|162229557|gb|FC404851.1|FC404851
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATG ACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATTEST: gi|162154880|gb|FC331922.1|FC331922
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATG ACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATTEST: gi|162150938|gb|FC327418.1|FC327418
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATG ACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATTEST: gi|100360147|gb|BY966047.1|BY966047
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
EST: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCCATG ACTCAAGCAACTTTGAEST: gi|208382991|gb|DC927741.1|DC927741
genomic: ACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGA
EST: CACTGCTCGCCCCAATG ANTCAAGCAACTNTGANCCAGTATTTCAGAACATGCCTCATAATNGTGATT
genomic: CACTGCTCGCCCCAATGgtgtgtttaa ... ttacttgcagACTCAAGCAACTTTGAACCAGTATTTCAGAACATGCCTCATAATTGTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCACAAAATCAAGAGTACGGAGAAAGGCATTGAGGATGTTGCTGAGAACGAAGAAATGCCAGAGTACACGTCTGCCATCCCACTGCTCGCCCCAATGgtgtgtttaactacatcgttttggataatagatttggaagttaacagcagtcagctcattggtgaaggttttagggctttgtctaattgaagcgttacct
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA