Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctgaaagaatatattaaaattgactattggaagatgtgtaatctttttgataactctcgtgatctagatgtctgattgagtggcttattctgcgattttgagtattgcag

Basic information

species Physcomitrella patens
transcript PP1S22_76V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_76V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G148744_T02 (Zea mays), 5'ss of exon 4
ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctgaaagaatatattaaaattgactattggaagatgtgtaat-ctttttgataactctcgtgatctagatgtctgat-tgagtggcttattctgcgattttgagtattgcag
 || |||||| | ||||| |||||||| ||||| || |||||||| || ||||| |  ||  | |||||||||||||||||||| ||||| || || || || || |        | | |     |   || ||  ||  ||  | |   ||  |  |   |    |||  || |  |||| | |     |                           
GCAAGCTAAGTCGCGCCACTCCAATGGGCAGGGCCGCTGGCCCGTTAAATCAGCCAGGTTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgccc-------tctttc----tcatctttttaaatgtgcatgacatttcctactgtttggtttgacttacacttctgttatttccag---------------------------

upper sequence: PP1S22_76V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctgaaagaatatattaaaattgactattggaagatgtgtaatctttttga--taactctcgtgatctagatgtctgattgagtggcttattctgcgattttgagtattgcag
 |||||||||    | || |||||||| || ||||| |||||||| || |||||||  ||  | || ||||||||||||||||| ||||| ||||| || || ||||    | ||   |||  | |||| | ||        | | ||  |||| |   |||| ||    ||   ||   |  |||  |    | | |  |                 
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataa-gcatttgatttgattttt------catatgattattttaagtcaactttcaaagtcattatactt--ttggttttgctttgccacag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162262297|gb|FC437624.1|FC437624
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|67694098|gb|BJ954331.1|BJ954331
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162270731|gb|FC446344.1|FC446344
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162224836|gb|FC400836.1|FC400836
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162227758|gb|FC402686.1|FC402686
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18350710|gb|BJ182761.1|BJ182761
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|15728661|gb|BI740905.1|BI740905
EST:     CCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162262298|gb|FC437625.1|FC437625
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|19781574|gb|BQ039741.1|BQ039741
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162267059|gb|FC443290.1|FC443290
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37830037|gb|BJ588049.1|BJ588049
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37841076|gb|BJ599084.1|BJ599084
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162273803|gb|FC449734.1|FC449734
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162267060|gb|FC443291.1|FC443291
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18365111|gb|BJ197185.1|BJ197185
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18363914|gb|BJ195986.1|BJ195986
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18361968|gb|BJ194035.1|BJ194035
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37842317|gb|BJ600325.1|BJ600325
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37845725|gb|BJ603733.1|BJ603733
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162224837|gb|FC400837.1|FC400837
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18364653|gb|BJ196726.1|BJ196726
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|67692927|gb|BJ953160.1|BJ953160
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162205889|gb|FC381335.1|FC381335
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162270730|gb|FC446343.1|FC446343
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162272796|gb|FC447978.1|FC447978
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37834233|gb|BJ592245.1|BJ592245
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|67570800|gb|BJ943624.1|BJ943624
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAAACTCTCTCGTTGTCTCTCATATT
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATT
EST: gi|162205890|gb|FC381336.1|FC381336
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37845346|gb|BJ603354.1|BJ603354
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18365599|gb|BJ197676.1|BJ197676
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18345004|gb|BJ177045.1|BJ177045
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18352797|gb|BJ184852.1|BJ184852
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTANACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|15728104|gb|BI740621.1|BI740621
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|67571863|gb|BJ944687.1|BJ944687
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|37824207|gb|BJ582273.1|BJ582273
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|67569660|gb|BJ942484.1|BJ942484
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|18346488|gb|BJ178531.1|BJ178531
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162273804|gb|FC449735.1|FC449735
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
EST: gi|162227744|gb|FC402685.1|FC402685
EST:     CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAG                         GTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC
genomic: CAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 49

ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctga ... agtattgcagGTCAAGGGTCTTGATGTAGACTCTCTCGTTGTCTCTCATATTCAAGTCAACCAGGCGCAAAAGCAGCGTAGACGTACTTACCGTGCCCACGGACGTATCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctgaaagaatatattaaaattgactattggaagatgtgtaatctttttgataactctcgtgatctagatgtctgattgagtggcttattctgcgattttgagtattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA