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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCAGATCGGAAAGATGGGAACCTTGATGGGTGTCTTTGTACCATGTTTTCAAAACATCATGGGCATCATCTTTTACATCCGATTTACATGgtgagtttaatctcttaacgatgaaatagcacgtcgtgtttttcagtaggcacctcaaagtagtaatttacttagctctccccttcactcctgccatttggatgagatgaaatagttcaacttgtttattttttattgtcttaatttgttattaaagcaaagctttgaccgaatgagttttggatgattgacag

Basic information

species Physcomitrella patens
transcript PP1S22_329V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_329V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G432083_T01 (Zea mays), 5'ss of exon 2
ACTCAGATCGGA---AAGATGGGAACCTTGATGGGTGTCTTTGTACCATGTTTTCAAAACATCATGGGCATCATCTTTTACATCCGATTTACATGgtgagtttaatctcttaacgatgaaatagcacgtcgtgtt--tttcagtaggcacctcaaagtagtaatttacttagctctccccttcactcctgccatttggatgagatgaaatagttcaacttgtttattttttattgtcttaatttgttattaaagcaaagctttgaccgaatgagttttggatgattgacag
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---GAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTGgtaaggtattgcatacacttttgttatggcctcatacattgtttctatttgttattttctgagaatgctccact--gctcatacagatgttgtttcccttct----------------------------------------------------------------------------------------------